PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AA21G00040 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
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Family | C2H2 | ||||||||
Protein Properties | Length: 176aa MW: 20234.6 Da PI: 8.662 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 15.6 | 4.6e-05 | 57 | 79 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C + F++ L H+++H AA21G00040 57 YTCSFCRREFKSAQALGGHMNVH 79 9********************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 9.56E-7 | 54 | 83 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 4.9E-4 | 55 | 82 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 0.0052 | 57 | 79 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 11.157 | 57 | 84 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 1.2E-5 | 57 | 80 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 59 | 79 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 176 aa Download sequence Send to blast |
MKRTHLASFS KEDKTQEGER GEEEEEEEDF NGEIKNNIKN HYKNYEAGLI PWPPKNYTCS 60 FCRREFKSAQ ALGGHMNVHR RDRARLRQVP SWLFDPLHIP IPNPNPNSNP KPSSSSGQHL 120 RSKTTPYGGL VAREKRKSDV ETYELSGGDK KDEVLGFDAL RNPKQVLDLE LRLGYL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1njq_A | 5e-13 | 52 | 79 | 2 | 29 | superman protein |
2l1o_A | 5e-13 | 52 | 79 | 2 | 29 | Transcriptional regulator SUPERMAN |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may regulate cell division and growth. {ECO:0000269|Ref.4}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AA21G00040 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002862495.1 | 1e-65 | zinc finger protein 11 | ||||
Refseq | XP_002879984.1 | 1e-65 | zinc finger protein 11 | ||||
Swissprot | Q9SLB8 | 4e-66 | ZFP11_ARATH; Zinc finger protein 11 | ||||
TrEMBL | D7LI58 | 3e-64 | D7LI58_ARALL; Predicted protein | ||||
STRING | Al_scaffold_0409_3 | 4e-65 | (Arabidopsis lyrata) | ||||
STRING | scaffold_403098.1 | 4e-65 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM9575 | 24 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G42410.1 | 4e-52 | zinc finger protein 11 |