PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA21G00007
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family bHLH
Protein Properties Length: 381aa    MW: 42394.2 Da    PI: 6.6498
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA21G00007genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.11.4e-12313358655
                 HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                 +++Er RR ri +++ +L+el+P+      k  + a++L +AveYIk+Lq
  AA21G00007 313 SIAERVRRTRISERMRKLQELVPNM----EKQTNTADMLDLAVEYIKDLQ 358
                 689*********************7....467*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.066307357IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.44E-15310369IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.66E-12311360No hitNo description
Gene3DG3DSA:4.10.280.102.6E-13312369IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.5E-12313363IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.5E-9313358IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048573Biological Processphotoperiodism, flowering
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 381 aa     Download sequence    Send to blast
MDSNHVFDPN HLSSSSGSGL LRFRSAPSSV LAAFIDDDKA SSFDSDRLIS RFVSSNGGNA  60
DLGSPNPAEF DEKSPISVTE SAVTYASTLP LPPQLEPSSF LGLPPHYPRQ SKGLMNSVGL  120
DGSYQFMGMN NHHTKPVESN LLRQSSSPAG MFTDLSDQNG YGSIRSLMNY NGEEDEEENP  180
SNSNSLRRHC SLSSRPPSSL GMLSQIPENT TETISTNFEY NHWNHHDPSN FIDNLSSLKR  240
ETEDDGKLFL GTQNGSETGI NRVALLSHHL SLPKSSTTTR GAEMMSVDKY VQLQDSVPCK  300
IRAKRGCATH PRSIAERVRR TRISERMRKL QELVPNMEKQ TNTADMLDLA VEYIKDLQEQ  360
YKILNENRAN CKCMKKEKKM I
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00308DAPTransfer from AT2G42280Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA21G00007
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002881830.10.0transcription factor bHLH130 isoform X2
SwissprotQ66GR30.0BH130_ARATH; Transcription factor bHLH130
TrEMBLD7LI370.0D7LI37_ARALL; Basic helix-loop-helix family protein
STRINGscaffold_403077.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM62932745
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42280.11e-179bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]