PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA20G00029
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family MYB_related
Protein Properties Length: 483aa    MW: 55290.9 Da    PI: 4.2
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA20G00029genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.51.3e-07322363144
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrw 44 
                      r rW++++ el++++++++G++  + + + +   R+++q+k+++
       AA20G00029 322 RSRWSKQDTELFYEGIREFGSN-LSMVQQLFS-DRSREQIKLKF 363
                      78******************99.*********.*********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF159631.6E-23316399No hitNo description
PROSITE profilePS512939.803320371IPR017884SANT domain
Gene3DG3DSA:1.10.10.606.4E-4321364IPR009057Homeodomain-like
SMARTSM007171.8E-6321369IPR001005SANT/Myb domain
SuperFamilySSF466892.17E-8323373IPR009057Homeodomain-like
CDDcd001670.00139324364No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 483 aa     Download sequence    Send to blast
MEPEPVPETV PEPVLEPEPE PEPHVLRACT NVESSEKQCD DLEVPETQES AMFNDFVSSE  60
TVGEECHLDM ETLDIVQESN TAYEQHTGKF QPKPRLIETV IEEHNDIVND EHNTGYFAME  120
ATESEFMINE ESRNDFNINS DFYEDFGDEL NIPQVPGETV RVLEMETEQV SGEWEHDKHD  180
DSTSNDTITR AEKKAVKSKG AAGSRKRKKN NEEVTKSGEE PEKKFKHSTR RQRRTLEKEL  240
LETPDDEIRY LPFRDMLRLV DYKEWLEKKE AKGAAAATQA QEQPQGDIED DFGLESGENQ  300
EIIRAKPDSP VNYHSHMNRT ARSRWSKQDT ELFYEGIREF GSNLSMVQQL FSDRSREQIK  360
LKFKLEERRH PLKLNDALLS RSKHHIHFQN VIKKLKEEAA AAGEGEEGDE EEEEGATAGE  420
NLEEAEVTDV PENEVPEKSE ETERTEVKSD GGEGNGVRLD GGDEYDDEGD DDADYWGTYQ  480
SDI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1204208RKRKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA20G00029
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024005819.11e-139transcription factor TFIIIB component B'' homolog
TrEMBLA0A1J3CWA61e-152A0A1J3CWA6_NOCCA; Transcription factor TFIIIB component B
STRINGXP_006411718.11e-140(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM51542535
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39160.11e-120MYB_related family protein