PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AA1G00121

Organism

Aethionema arabicum

Taxonomic ID

228871

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema

Family

C2H2

Protein Properties

Length: 305aa MW: 33971.1 Da PI: 7.9314

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AA1G00121	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.7	0.00019	5	27	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC+ C ksF + L H+r+H AA1G00121 5 HKCKVCWKSFVNGRALGGHMRSH 27 79********************9 PP
2	zf-C2H2	14.3	0.00012	184	206	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC+ C+k+F++ L H +H AA1G00121 184 FKCETCDKVFKSYQALGGHRASH 206 89***********9999998887 PP
3	zf-C2H2	13.1	0.00029	240	262	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++Cp+C k+F++ L H r+H AA1G00121 240 HECPICFKVFTSGQALGGHKRSH 262 79******************999 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	4.6E-6	2	35	No hit	No description
PROSITE profile	PS50157	10.263	5	32	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.019	5	27	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	5.7E-4	5	36	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
Pfam	PF13912	3.2E-7	5	28	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	7	27	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	2.4E-7	182	206	No hit	No description
PROSITE profile	PS50157	10.887	184	211	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.019	184	206	IPR015880	Zinc finger, C2H2-like
Pfam	PF13912	1.2E-10	184	208	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	186	206	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	2.4E-7	235	262	No hit	No description
PROSITE profile	PS50157	9.681	240	267	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.089	240	262	IPR015880	Zinc finger, C2H2-like
Pfam	PF13912	5.9E-11	240	262	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	242	262	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 305 aa Download sequence Send to blast
MEEKHKCKVC WKSFVNGRAL GGHMRSHMLT LPLPCNNQSQ LLSTSSSSSS SAEKRVASMA 60 DHECVLQDRE SETESSKKPT RKRSKLNRRS IYASSNNQQE LSEAIAGEAE EKMMKTNQQQ 120 LTESCIDQEP MSSVSDTAAA EEDVAFSLMM LSRDKWGKKE EEEEDDDEIE FENWKKKMKK 180 KKCFKCETCD KVFKSYQALG GHRASHKKNK ASETPIQQHN NTTIQGSLEK QKKKNSNSSH 240 ECPICFKVFT SGQALGGHKR SHATATTAAA TVPENSAAMK RGSLIDLNLP APSEDEDLVS 300 AVFNA

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that may be involved in stress responses. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	AA1G00121

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_171705.1	4e-92	C2H2-like zinc finger protein
Refseq	XP_006418480.1	7e-92	zinc finger protein ZAT1
Swissprot	Q39092	3e-93	ZAT1_ARATH; Zinc finger protein ZAT1
TrEMBL	A0A087HKC1	2e-98	A0A087HKC1_ARAAL; Uncharacterized protein
STRING	Bostr.5325s0123.1.p	1e-107	(Boechera stricta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1465	28	93

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G02030.1	1e-83	C2H2-like zinc finger protein

Publications ? help Back to Top
Vidal EA, et al. Integrated RNA-seq and sRNA-seq analysis identifies novel nitrate-responsive genes in Arabidopsis thaliana roots. BMC Genomics, 2013. 14: p. 701 [PMID:24119003]