PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA1G00034
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family B3
Protein Properties Length: 379aa    MW: 42839.2 Da    PI: 6.8045
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA1G00034genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B398.15.4e-3153156197
                EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-..SS.SEE..E CS
         B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld..gr.sefelv 93 
                f+kv tpsdv+k++rlv+pk++ae++    ++++++++ l ++d++g+ W+++++y+++s++yv+tkGW++Fvk+++L++gD+v F++   g+ ++ +l+
  AA1G00034  53 FDKVVTPSDVGKLNRLVIPKQHAEKYfpldSSNNQNGTLLNFQDRNGKMWRFRYSYWNSSQSYVMTKGWSRFVKEKKLDAGDIVSFQRGigGEsERSRLF 152
                89***************************966677889*************************************************4433555666666 PP

                EEEE CS
         B3  94 vkvf 97 
                + ++
  AA1G00034 153 IDWR 156
                6665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.1E-4245160IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.36E-3050154IPR015300DNA-binding pseudobarrel domain
CDDcd100172.44E-2651147No hitNo description
PfamPF023623.3E-2853157IPR003340B3 DNA binding domain
SMARTSM010191.0E-2153159IPR003340B3 DNA binding domain
PROSITE profilePS5086314.69253159IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009908Biological Processflower development
GO:0048366Biological Processleaf development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 379 aa     Download sequence    Send to blast
MDLSLATTTT SSDHDQDHRD QEASNIGASS SSGTGNNNNN LMMMMAIEKE HMFDKVVTPS  60
DVGKLNRLVI PKQHAEKYFP LDSSNNQNGT LLNFQDRNGK MWRFRYSYWN SSQSYVMTKG  120
WSRFVKEKKL DAGDIVSFQR GIGGESERSR LFIDWRHRPD MTLVPNHHHH HHHHQFGNFG  180
FNFNFSPSSS SHQYSNTRLL PPPLPEYSIP ISRNLNIGNR YQHQQYQHQH QHELIGYGYG  240
GNLGGRYYYN GSPLDQRNIG VGPSDPLVIE SIPVVPGRIT PVMFSQQPQP PPLPPPPAAA  300
AAGKRLRLFG VNMEFGTDYD HQYHNLGGET MQRGEIGTSS ERNLLIDDHD DDNDGNDDDG  360
DDPFAKKGKS SSFSLNFNP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A2e-62481613116B3 domain-containing transcription factor NGA1
5os9_B2e-62481613116B3 domain-containing transcription factor NGA1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtRegulates lateral organ growth. Functionally redundant with NGA1, NGA2 and NGA4. {ECO:0000269|PubMed:16603651}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA1G00034
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010474686.11e-148PREDICTED: B3 domain-containing transcription factor NGA3
SwissprotQ9MAN11e-135NGA3_ARATH; B3 domain-containing transcription factor NGA3
TrEMBLA0A1J3FZ411e-142A0A1J3FZ41_NOCCA; B3 domain-containing transcription factor NGA3
STRINGXP_010474686.11e-147(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM139901724
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01030.11e-106B3 family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Alvarez JP,Furumizu C,Efroni I,Eshed Y,Bowman JL
    Active suppression of a leaf meristem orchestrates determinate leaf growth.
    Elife, 2017.
    [PMID:27710768]