PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA19G00468
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family HSF
Protein Properties Length: 214aa    MW: 25117.7 Da    PI: 4.7589
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA19G00468genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind113.21.8e-358992102
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl k+y+++ed++++e+isw+ +g++fvv+++ efa+++Lp+ Fkhsnf+SFvRQLn+YgF+kv++ +         weF+++ F kgk+ell++i+
    AA19G00468   8 FLVKTYKVVEDPTTDEVISWNGDGTAFVVWQPAEFARDLLPTLFKHSNFSSFVRQLNTYGFHKVTTIR---------WEFSNEMFIKGKRELLRNIR 95 
                   9*****************************************************************99.........******************** PP

                   XXXX CS
  HSF_DNA-bind  99 rkks 102
                   r+ks
    AA19G00468  96 RRKS 99 
                   **97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004153.6E-55497IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467853.45E-34497IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.102.6E-36597IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000562.5E-18831IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004472.6E-31897IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.5E-184658IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043404771IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.5E-185971IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF483719.02E-5103204IPR016024Armadillo-type fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0046686Biological Processresponse to cadmium ion
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 214 aa     Download sequence    Send to blast
MEDHLPPFLV KTYKVVEDPT TDEVISWNGD GTAFVVWQPA EFARDLLPTL FKHSNFSSFV  60
RQLNTYGFHK VTTIRWEFSN EMFIKGKREL LRNIRRRKSH WSHQQNKTHQ ILSSSLQDID  120
HHQEDQRSSS ASSSFVYSAL LDQNKSLKKT NQLLSSELGK TQNKCKQLME LVERYTEVPR  180
EEEDHEIYDD DDDDDDDDDD VDDDGFKLFG VKLE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A5e-2349716120Heat shock factor protein 1
5hdg_A5e-235977110Heat shock factor protein 1
5hdn_A5e-235977110Heat shock factor protein 1
5hdn_B5e-235977110Heat shock factor protein 1
5hdn_C5e-235977110Heat shock factor protein 1
5hdn_D5e-235977110Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00305DAPTransfer from AT2G41690Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA19G00468
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023640748.11e-92heat stress transcription factor B-3
SwissprotO222302e-93HSFB3_ARATH; Heat stress transcription factor B-3
TrEMBLA0A1J3CMP01e-91A0A1J3CMP0_NOCCA; Heat stress transcription factor B-3 (Fragment)
STRINGAT2G41690.18e-92(Arabidopsis thaliana)
STRINGXP_006294789.11e-91(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM108142731
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41690.14e-90heat shock transcription factor B3