PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA19G00023
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family HD-ZIP
Protein Properties Length: 736aa    MW: 81127.3 Da    PI: 5.3409
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA19G00023genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox60.82.1e-1970126157
                 TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
    Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 
                 +++ +++t++q++e+e++F+++++p+ ++r++L+++l+L+  qVk+WFqN+R+++k+
  AA19G00023  70 KKRYHRHTQHQIQEMETFFKECPHPDDKQRKQLSRELSLEPLQVKFWFQNKRTQMKN 126
                 688999************************************************995 PP
2START209.51.3e-652574751206
                 HHHHHHHHHHHHHHHHC-TT-EEEE..EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEEECTT CS
       START   1 elaeeaaqelvkkalaeepgWvkss..esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetlevissg 88 
                 ela +a++el+++a+++ep+W  +     +++de+++ f+++ +     ++ ea+r+ +vv+m++++ ve+l+d++ qW++ ++    +a+t++ +s+g
  AA19G00023 257 ELAVAAMEELIRMAQVNEPLWINDGksLVLDQDEYIRMFPRGIGpkpsgFRCEASRENAVVIMNHVNIVEILMDVN-QWSTVFTgmvsRAMTMAILSTG 354
                 57899****************988855569***********999********************************.********************** PP

                 ......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHH CS
       START  89 ......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwl 180
                       galq+m+ae+q++splvp R+ +f+Ry++++g+g+w++vdvS+ds q++p     vR++++ Sg++i++++ng+skv wvehv++++r +h+l
  AA19G00023 355 vggnynGALQVMSAEFQVPSPLVPtRETYFARYCKEQGDGSWAVVDVSLDSLQQNPP----VRCRRRASGCVIQEMPNGYSKVSWVEHVEVDDRGVHNL 449
                 ********************************************************8....************************************** PP

                 HHHHHHHHHHHHHHHHHHHTXXXXXX CS
       START 181 lrslvksglaegaktwvatlqrqcek 206
                 ++ +v+sg+a+gak+wvatl+rqce+
  AA19G00023 450 YKDMVSSGQAFGAKRWVATLDRQCER 475
                 ************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.607.6E-2148125IPR009057Homeodomain-like
SuperFamilySSF466891.38E-1859127IPR009057Homeodomain-like
PROSITE profilePS5007116.45567127IPR001356Homeobox domain
SMARTSM003891.2E-1768131IPR001356Homeobox domain
CDDcd000864.62E-1870128No hitNo description
PfamPF000465.5E-1770125IPR001356Homeobox domain
PROSITE patternPS000270102125IPR017970Homeobox, conserved site
SuperFamilySSF559613.96E-33248477No hitNo description
PROSITE profilePS5084841.854248478IPR002913START domain
CDDcd088757.00E-126252474No hitNo description
SMARTSM002341.2E-59257475IPR002913START domain
PfamPF018521.8E-57258475IPR002913START domain
Gene3DG3DSA:3.30.530.205.2E-5360472IPR023393START-like domain
SuperFamilySSF559616.15E-22494728No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010090Biological Processtrichome morphogenesis
GO:0048497Biological Processmaintenance of floral organ identity
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 736 aa     Download sequence    Send to blast
MFEPNMLLAA INNTDSNNHN YDNNDNNNNN HTNELFLRDD EFDSANTKSG SENQEGGSGN  60
DQDLLHPNKK KRYHRHTQHQ IQEMETFFKE CPHPDDKQRK QLSRELSLEP LQVKFWFQNK  120
RTQMKNHHER HENSQLRAEN EKVRGENIRY REALANASCP NCGGPTAIGE MSFDEHHLRL  180
ENARLREEID RISAIAAKYV GKPVLSYPLM SPPLPPPPPR PLELGISNLV GEIYGNSNDL  240
LKSLPAPTEV DKPAIIELAV AAMEELIRMA QVNEPLWIND GKSLVLDQDE YIRMFPRGIG  300
PKPSGFRCEA SRENAVVIMN HVNIVEILMD VNQWSTVFTG MVSRAMTMAI LSTGVGGNYN  360
GALQVMSAEF QVPSPLVPTR ETYFARYCKE QGDGSWAVVD VSLDSLQQNP PVRCRRRASG  420
CVIQEMPNGY SKVSWVEHVE VDDRGVHNLY KDMVSSGQAF GAKRWVATLD RQCERLASVM  480
ATNISSGEFG VITNQEGRRS MLKLAERMVI SFCAGVSAST AHTWTTLSGT GAEDVRVMTR  540
KSVDDPGRPP GIVLSAATSF WIPVAPKRIF DFLRDENSRN EWDILSNGGV VQEMAHIANG  600
RDTGNCVSLL RSANSSQSNM LILQESCTDS TASFVIYAPV DIVAMNIVLN GGDPDYVALL  660
PSGFAILPDG TAQSDGTDAN NGVTGSDGGS LLTVAFQILV DSVPTAKLSL GSVATVNNLI  720
ACTVERIKAS MSCESS
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA19G00023
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001117231.10.0homeodomain GLABROUS 2
SwissprotQ94C370.0HDG2_ARATH; Homeobox-leucine zipper protein HDG2
TrEMBLB3H6Y40.0B3H6Y4_ARATH; Homeodomain GLABROUS 2
STRINGAT1G05230.40.0(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM49128149
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05230.30.0homeodomain GLABROUS 2