PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AA17G00077

Organism

Aethionema arabicum

Taxonomic ID

228871

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema

Family

CPP

Protein Properties

Length: 658aa MW: 71949.9 Da PI: 6.8787

Description

CPP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AA17G00077	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCR	51.1	2.6e-16	442	480	1	39
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 ++k+gCnCkks+ClkkYCeC++ g+ Cs +C+Ce+CkN AA17G00077 442 RHKRGCNCKKSNCLKKYCECYQGGVGCSINCRCEGCKNA 480 589***********************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51634	25.365	356	482	IPR005172	CRC domain
SMART	SM01114	3.7E-17	442	483	IPR033467	Tesmin/TSO1-like CXC domain
Pfam	PF03638	1.0E-11	444	480	IPR005172	CRC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009934	Biological Process	regulation of meristem structural organization
GO:0048444	Biological Process	floral organ morphogenesis
GO:0051302	Biological Process	regulation of cell division
GO:0005634	Cellular Component	nucleus

Sequence ? help Back to Top
Protein Sequence Length: 658 aa Download sequence Send to blast
MDKPPKPPAQ IDTPLSKSKS KFEDSPVFNY INNLSPIEPV KSIPTGQTFN SLSFASPPPV 60 FASPHVTSHR ESRFFKSHNS SDLSKTMESL EGASSKGEGA AAAEDLNKDE ASIEMSCDNS 120 VMEMPQILNS DCQTPNRDTG DVTEEMLAPS ASQGENCFSE DVRMGLQKML NAPEENETPD 180 CGRLISDATE LLVFRSPNDS EAFGCLVKKI SSSEKRFCAG VLALKQPDTS YVTKDIPANG 240 SSSESEPPLP LLPNESGSNL HRGMRRRCLH FEVAGKRKKE IADDQQTMSN NKPAGESSSR 300 CVVPGIGLHL NAIAMSSSEN KTISIHDYSI TGEIQKTLSD STTPIHSQDN AREALNQTGI 360 EPVEGVCLNK LEKVTHVSDV TAKKPCSCVD CFNKPIHEET VLATRKQIES RNPLAFAPKV 420 IRRADSVMET GDDASKTPAS ARHKRGCNCK KSNCLKKYCE CYQGGVGCSI NCRCEGCKNA 480 FGRKDGSLFV SMDSKQEDHE THDKRIPNIQ QNSEMSKEIE QNPSSDLPST PLPPYRHLVI 540 QQPFLSKNRL PPTQFSLGIG SSSGLENCRS FRKPNSDLTE SRIEKPLETI TEDRAETMPE 600 ILVNSPITTI KAISPNGKRV SPPHLNSSES GSILGRRSTG RKLILRSIPA FPSLNQQQ

Sequence ? help Back to Top

Protein Sequence Length: 658 aa Download sequence Send to blast

MDKPPKPPAQ IDTPLSKSKS KFEDSPVFNY INNLSPIEPV KSIPTGQTFN SLSFASPPPV  60
FASPHVTSHR ESRFFKSHNS SDLSKTMESL EGASSKGEGA AAAEDLNKDE ASIEMSCDNS  120
VMEMPQILNS DCQTPNRDTG DVTEEMLAPS ASQGENCFSE DVRMGLQKML NAPEENETPD  180
CGRLISDATE LLVFRSPNDS EAFGCLVKKI SSSEKRFCAG VLALKQPDTS YVTKDIPANG  240
SSSESEPPLP LLPNESGSNL HRGMRRRCLH FEVAGKRKKE IADDQQTMSN NKPAGESSSR  300
CVVPGIGLHL NAIAMSSSEN KTISIHDYSI TGEIQKTLSD STTPIHSQDN AREALNQTGI  360
EPVEGVCLNK LEKVTHVSDV TAKKPCSCVD CFNKPIHEET VLATRKQIES RNPLAFAPKV  420
IRRADSVMET GDDASKTPAS ARHKRGCNCK KSNCLKKYCE CYQGGVGCSI NCRCEGCKNA  480
FGRKDGSLFV SMDSKQEDHE THDKRIPNIQ QNSEMSKEIE QNPSSDLPST PLPPYRHLVI  540
QQPFLSKNRL PPTQFSLGIG SSSGLENCRS FRKPNSDLTE SRIEKPLETI TEDRAETMPE  600
ILVNSPITTI KAISPNGKRV SPPHLNSSES GSILGRRSTG RKLILRSIPA FPSLNQQQ

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5fd3_A	8e-11	397	479	49	120	Protein lin-54 homolog
5fd3_B	8e-11	397	479	49	120	Protein lin-54 homolog
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	264	278	RRRCLHFEVAGKRKK

Functional Description ? help Back to Top
Source	Description
UniProt	Probable floral-specific cell division component, required for proper organ formation in flowers. Regulates the floral meristem cell division and the inflorescence meristem organization. Plays a role in development of both male and female reproductive tissues. {ECO:0000269\|PubMed:10769244, ECO:0000269\|PubMed:10769245, ECO:0000269\|PubMed:9043081, ECO:0000269\|PubMed:9725857}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00370	DAP	Transfer from AT3G22780	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	AA17G00077

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006297098.1	0.0	CRC domain-containing protein TSO1
Swissprot	Q9LUI3	0.0	TSO1_ARATH; CRC domain-containing protein TSO1
TrEMBL	D7L2F3	0.0	D7L2F3_ARALL; Uncharacterized protein
STRING	Bostr.19424s0382.1.p	0.0	(Boechera stricta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1467	28	91

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G22780.1	0.0	Tesmin/TSO1-like CXC domain-containing protein

Publications ? help Back to Top
Lu T,Dou Y,Zhang C Fuzzy clustering of CPP family in plants with evolution and interaction analyses. BMC Bioinformatics, 2013. 14 Suppl 13: p. S10 [PMID:24268301] Xie W, et al. Exploring potential new floral organ morphogenesis genes of Arabidopsis thaliana using systems biology approach. Front Plant Sci, 2015. 6: p. 829 [PMID:26528302] Wang W,Sijacic P,Xu P,Lian H,Liu Z Arabidopsis TSO1 and MYB3R1 form a regulatory module to coordinate cell proliferation with differentiation in shoot and root. Proc. Natl. Acad. Sci. U.S.A., 2018. 115(13): p. E3045-E3054 [PMID:29535223]