PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AA179G00003

Organism

Aethionema arabicum

Taxonomic ID

228871

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema

Family

Trihelix

Protein Properties

Length: 281aa MW: 32255.4 Da PI: 9.7816

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AA179G00003	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	71.4	1.7e-22	58	138	2	86
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 Wt +e+l+Li+ ++e++ +++rg lk+ +We++s + ++ g+ers++qC++k+e+++kr++ ++++ ++ +s +p+++q+e AA179G00003 58 WTPDETLLLIDTYKEKWYAIGRGPLKAIHWEDISVTVsSRSGIERSSTQCRHKIEKMRKRFRSERQSLGR-----TSPWPFYTQME 138 *********************************998899************************8.....467*****8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	6.121	58	115	IPR017877	Myb-like domain
Pfam	PF13837	1.3E-19	58	140	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 281 aa Download sequence Send to blast
MATPSPTASP PSDSNPNSTA TPPQQSLPFR TPPPQDITVV ALAASTSACA RKTQPILWTP 60 DETLLLIDTY KEKWYAIGRG PLKAIHWEDI SVTVSSRSGI ERSSTQCRHK IEKMRKRFRS 120 ERQSLGRTSP WPFYTQMEEL ESNPAPISAQ PLTRLPPSND FEEDEDEDER QSKSRSINYI 180 LRRPSTVNRF ARTEMEYGER WKRKRNGEED EGRSEKKRGA SAVAAEIRAF AERVMAMEKK 240 KMEFAKESVQ LRKEMEMQRL DLIQSSQTRI LHFLNNAFHS L

Cis-element ? help Back to Top
Source	Link
PlantRegMap	AA179G00003

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006298195.1	1e-122	trihelix transcription factor ASIL1
TrEMBL	A0A1J3CS39	1e-126	A0A1J3CS39_NOCCA; Trihelix transcription factor ASIL2 (Fragment)
STRING	XP_006298195.1	1e-122	(Capsella rubella)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM10281	22	32

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24860.1	1e-106	Trihelix family protein