PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA178G00001
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family B3
Protein Properties Length: 452aa    MW: 51145.1 Da    PI: 4.7209
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA178G00001genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B344.72.5e-1431961796
                 E--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
           B3 17 vlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96
                 ++p +fa++++       +l +++ es r W+vkl      + ++lt+GW++F+ a++Lk+gD++vFk++g++ f  +v+v
  AA178G00001 31 TVPDEFATKYK-------KLWFRSdESDRNWRVKL------EDFFLTDGWEKFAAAHNLKDGDVLVFKHEGDDFF--HVSV 96
                 57888888775.......3555554999*******......88*************************9997777..7776 PP
2B348.61.5e-15166256799
                  .-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
           B3   7 psdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                   ++ l  +rl l  +f+    g++  + +++ +++e gr+W++ +   ++   +++++ W++F+ angL egD + Fkl++ +++++v+ +++k
  AA178G00001 166 AHYRLLCDRLDLGERFTLLLsGEN--KRREIDVQNELGRKWTMLHVLINSTVVFYIRGDWNSFCCANGLSEGDLCKFKLVE-NGETPVLLLCSK 256
                  556666677778888875554444..5569***************99999999**************************98.677799999987 PP
3B356.74.2e-183053881799
                  E--HHH.HTT---..--SEEEEEETTS-EEEEEE......EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
           B3  17 vlpkkfaeehggkkeesktltledesgrsWevkliy....rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                  ++p  f++e+g+kk++  ++tl +++gr+W  +l++    +++s+++++++GW+e++k+ng+ ++D+++++l++ +++++ +k+++k
  AA178G00001 305 SFPQGFTRENGIKKPG--EITLLNKDGRKWAGYLRMsgciDNGSEWFYISRGWREMCKENGVMVNDSFMLELIW-DDATPILKFCSK 388
                  789********99766..8************999888999**********************************.788899999987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010192.7E-1122100IPR003340B3 DNA binding domain
SuperFamilySSF1019364.12E-132996IPR015300DNA-binding pseudobarrel domain
PfamPF023627.6E-113195IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.104.4E-143196IPR015300DNA-binding pseudobarrel domain
CDDcd100174.24E-133396No hitNo description
PROSITE profilePS5086311.81548100IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.109.1E-15156256IPR015300DNA-binding pseudobarrel domain
SMARTSM010195.5E-20160257IPR003340B3 DNA binding domain
PROSITE profilePS5086312.675160256IPR003340B3 DNA binding domain
SuperFamilySSF1019369.22E-17161258IPR015300DNA-binding pseudobarrel domain
PfamPF023621.2E-14162256IPR003340B3 DNA binding domain
CDDcd100172.07E-13172255No hitNo description
SMARTSM010191.6E-16298389IPR003340B3 DNA binding domain
SuperFamilySSF1019361.04E-15304392IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.109.7E-15304388IPR015300DNA-binding pseudobarrel domain
PfamPF023624.0E-18305388IPR003340B3 DNA binding domain
CDDcd100174.67E-13305387No hitNo description
PROSITE profilePS5086311.124306388IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 452 aa     Download sequence    Send to blast
MADFPPFRQT FLTGNTNYCQ TFVTVVVVLQ TVPDEFATKY KKLWFRSDES DRNWRVKLED  60
FFLTDGWEKF AAAHNLKDGD VLVFKHEGDD FFHVSVESQS DTVDAQNASC GYADIGEDYT  120
VDNGVDVGVD VVDAGGGEDE GDEGNISEKK DKNPEADSSC FVVRVAHYRL LCDRLDLGER  180
FTLLLSGENK RREIDVQNEL GRKWTMLHVL INSTVVFYIR GDWNSFCCAN GLSEGDLCKF  240
KLVENGETPV LLLCSKESAI HKSSSGEDDD EEECHEVDAA VKTPSRFVTL EYTPSWHLFG  300
LLLQSFPQGF TRENGIKKPG EITLLNKDGR KWAGYLRMSG CIDNGSEWFY ISRGWREMCK  360
ENGVMVNDSF MLELIWDDAT PILKFCSKIQ NPEAQCKGRT FTRGGGSKRV TREPEQQEGE  420
KIAAMEPSYY TPTTKKSSTN QRNLRSTQSR SC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1316330KKPGEITLLNKDGRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA178G00001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM99501736
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31610.11e-105B3 family protein