PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA168G00019
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family B3
Protein Properties Length: 305aa    MW: 34972.8 Da    PI: 8.4421
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA168G00019genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B332.51.6e-10178260377
                  EE-..-HHHHT.T-EE--HHH.HTT........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT CS
           B3   3 kvltpsdvlks.grlvlpkkfaeeh........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkeg 77 
                  k+lt+sd +   +rl+l kk +++         +++  e+++++++ ++g+  e+k+++++k+ + vl++GW++Fvka gL+  
  AA168G00019 178 KQLTKSDINGGqSRLMLGKKEVKDKflcllkesEIPGVEGIDVSVYGPDGKPHEMKFKMWNKD-TPVLANGWSKFVKAYGLERY 260
                  77777875544499********9999*99988855555899*********9888888889997.679**************965 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.5E-12168273IPR015300DNA-binding pseudobarrel domain
CDDcd100173.90E-13174279No hitNo description
SuperFamilySSF1019365.49E-13175281IPR015300DNA-binding pseudobarrel domain
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MKTLFSLITD NINGEPQNFI ADVIKKLEAV INEGVIKKAC KKRKIMEEED TAEEILFNFV  60
LKILLKIFKG NIGQPEKPEA VIKNPEAVIE KPEAVIEKPE AVNEKPEAVM EKPEAVIEKV  120
RKKRKIVEED DTEETLQFLL QRLNNGESKN PPPDQIVSCI PDPNVEAQPH QFSRCIYKQL  180
TKSDINGGQS RLMLGKKEVK DKFLCLLKES EIPGVEGIDV SVYGPDGKPH EMKFKMWNKD  240
TPVLANGWSK FVKAYGLERY SYVLKIWMFR ASEDHKICFV IDSIRFDDIK KQLSKRILKN  300
VFLKS
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA168G00019
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022556308.14e-43putative B3 domain-containing protein At4g03170
TrEMBLA0A3P6CAN92e-41A0A3P6CAN9_BRAOL; Uncharacterized protein
STRINGBo4g188830.12e-41(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM21031835
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G03170.18e-36B3 family protein