PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA15G00199
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family C2H2
Protein Properties Length: 462aa    MW: 50963.7 Da    PI: 8.7771
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA15G00199genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.32.7e-0597119123
                 EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                 + C++C+k F r  nL+ H r H
  AA15G00199  97 FICEICNKGFQRDQNLQLHRRGH 119
                 89*******************88 PP
2zf-C2H213.50.00022176198123
                 EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                 +kC++C+k++  +s+ k H +t+
  AA15G00199 176 WKCEKCSKRYAVQSDWKAHFKTC 198
                 58*****************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.52E-796119No hitNo description
Gene3DG3DSA:3.30.160.601.2E-596119IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.84597119IPR007087Zinc finger, C2H2
SMARTSM003550.02297119IPR015880Zinc finger, C2H2-like
PfamPF121715.4E-597119IPR022755Zinc finger, double-stranded RNA binding
PROSITE patternPS00028099119IPR007087Zinc finger, C2H2
SMARTSM00355140141171IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.606.1E-5164197IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.52E-7171196No hitNo description
SMARTSM00355110176196IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 462 aa     Download sequence    Send to blast
MMNKDMVLHQ VDENMSNLTS ASGEQAATSV SSGNRTETTA SNFNYNINPQ IQNQQHKQEQ  60
ELCFVPQKKK RNQPGNPDPE SEVIALSPKT LMATNRFICE ICNKGFQRDQ NLQLHRRGHN  120
LPWKLKQRSL NKDVIIKKKV YICPETSCVH HNPARALGDL TGIKKHFFRK HGEKKWKCEK  180
CSKRYAVQSD WKAHFKTCGT KEYKCDCGTL FSRRDSFITH RAFCDALAEE SSRSNPNFIQ  240
SSSSKSDLKD HMKQESHQNI DHYTSITSHQ HQHHQNIPSW LTPNPNPNPG LIPNPGLSSN  300
SGLYPFATTS SNFNQFSAAM SATALLQKAA QMGSTKSTSL PQVTSSSSNN MTTMGALMTS  360
AESNGFSFQE YMYGSNGGDE MFNNSFGMFM RSSTNGGGGG AQASSTVVVA GDGGGGGGEE  420
VTRDFLGLRT LMSQNEILNL AALGNCLNNS TTSDQHQHSQ GN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C9e-35172233364Zinc finger protein JACKDAW
5b3h_F9e-35172233364Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000305}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00206DAPTransfer from AT1G55110Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA15G00199
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018451546.11e-177PREDICTED: protein indeterminate-domain 7-like
SwissprotQ8H1F51e-171IDD7_ARATH; Protein indeterminate-domain 7
TrEMBLA0A1J3CYJ91e-176A0A1J3CYJ9_NOCCA; Protein indeterminate-domain 7
STRINGBo3g184730.11e-174(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15528306
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G55110.11e-156indeterminate(ID)-domain 7
Publications ? help Back to Top
  1. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]