PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AA15G00159

Organism

Aethionema arabicum

Taxonomic ID

228871

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema

Family

Trihelix

Protein Properties

Length: 884aa MW: 96170.8 Da PI: 9.9111

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AA15G00159	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	49.2	1.4e-15	80	166	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm...rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W+++ +++Li+a e+ ++ ++g lk+++W+ev++ + r+ ++ ++ +qCk++++ ++k+yk++k+ ++ + s++ +f++le AA15G00159 80 CWSEEATKVLIDAWGERFSEPGKGTLKQQHWKEVAEIVnksRQCKYPKTDIQCKNRIDTVKKKYKQEKAKIASG--DGPSRWIFFKKLE 166 7***********************************99999999**********************98..56668****98 PP
2	trihelix	44.7	3.5e-14	544	630	2	86
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 W++ + +Li+a ++ +l+rg+lk+++W+ev++ + +++ ++ +qCk++++ ++k+yk++k+ ++ + s++++fd+l+ AA15G00159 544 WSEGATAVLIDAWGQKYLELSRGNLKQNHWKEVAEIVssndDYGKIPKTDIQCKNRIDTVKKKYKQEKAKIASG--DGPSRWVFFDKLD 630 ***********************************988888999**********************98..56668****98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00717	7.5	77	142	IPR001005	SANT/Myb domain
Pfam	PF13837	5.5E-23	79	168	No hit	No description
Pfam	PF05564	2.9E-6	371	472	IPR008406	Dormancy/auxin associated protein
SMART	SM00717	0.24	459	606	IPR001005	SANT/Myb domain
Pfam	PF13837	1.8E-23	542	632	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 884 aa Download sequence Send to blast
MEEDDETQSL PSPGGSLSPI PSSPPNDDVT IADVKPPVSS QSPGDALALV VHTPAVTGGV 60 SGSRNGRIGG GGSGGGRDDC WSEEATKVLI DAWGERFSEP GKGTLKQQHW KEVAEIVNKS 120 RQCKYPKTDI QCKNRIDTVK KKYKQEKAKI ASGDGPSRWI FFKKLESLIG ANTNSKIHNS 180 EGGGRSSDKA PMGILMNRGS NLYKHQAKGT QMTQQGDVKR SGDSMRWHFR KRSASETESE 240 SEPEPSGDSA DSLPPQPSLP VPKRVKIEKT GGGGGGGGSG LGDIAKAILG FTEAYEKAET 300 AKLKQMMELE KDRMKFAKEM ELQRMQFLKT QLEIAQSSQD EEGGERRMLR NNLDDARSMK 360 NNGDMGFLHK LWDETVAGPA PENGLGKLRK PNSLSTVRSP PLSDDQVTRC IVVTRGGNNG 420 LRRLKMEPGR VPDSPTGSNS NPGTPLTPGT PYFGPFTAGK EPISGEDDEE FRSHASPVDS 480 DSSSPPAGRI TVTVASAGPP SSSSLHDSNA LALALPMKSS GGGRSRGNGS NGRSGGGGGR 540 EDSWSEGATA VLIDAWGQKY LELSRGNLKQ NHWKEVAEIV SSNDDYGKIP KTDIQCKNRI 600 DTVKKKYKQE KAKIASGDGP SRWVFFDKLD RLIGSTAKIP TPSPGSGRLQ NIPVGIPQNI 660 PVGIPTRNPS NLYNQLAKST KPPFDRLMGA TARIPSASLG GGGSYGDVPT GIPVNSNMFG 720 QRGRTSASPV PRQGIVERCS ESKRWRFKKR NGLDSDSESD TEMSADSADS LPPPPLTKRV 780 KIEKEKVVDE KVDKWKELSL VIKRFGEAYE EIENAKLQQF VEMEKTRLKF MKEMELQRMQ 840 FFIKTQMEIS RLKQQQGRRN GVGDTSRDHH HNDENKNNKK NINT

Sequence ? help Back to Top

Protein Sequence Length: 884 aa Download sequence Send to blast

MEEDDETQSL PSPGGSLSPI PSSPPNDDVT IADVKPPVSS QSPGDALALV VHTPAVTGGV  60
SGSRNGRIGG GGSGGGRDDC WSEEATKVLI DAWGERFSEP GKGTLKQQHW KEVAEIVNKS  120
RQCKYPKTDI QCKNRIDTVK KKYKQEKAKI ASGDGPSRWI FFKKLESLIG ANTNSKIHNS  180
EGGGRSSDKA PMGILMNRGS NLYKHQAKGT QMTQQGDVKR SGDSMRWHFR KRSASETESE  240
SEPEPSGDSA DSLPPQPSLP VPKRVKIEKT GGGGGGGGSG LGDIAKAILG FTEAYEKAET  300
AKLKQMMELE KDRMKFAKEM ELQRMQFLKT QLEIAQSSQD EEGGERRMLR NNLDDARSMK  360
NNGDMGFLHK LWDETVAGPA PENGLGKLRK PNSLSTVRSP PLSDDQVTRC IVVTRGGNNG  420
LRRLKMEPGR VPDSPTGSNS NPGTPLTPGT PYFGPFTAGK EPISGEDDEE FRSHASPVDS  480
DSSSPPAGRI TVTVASAGPP SSSSLHDSNA LALALPMKSS GGGRSRGNGS NGRSGGGGGR  540
EDSWSEGATA VLIDAWGQKY LELSRGNLKQ NHWKEVAEIV SSNDDYGKIP KTDIQCKNRI  600
DTVKKKYKQE KAKIASGDGP SRWVFFDKLD RLIGSTAKIP TPSPGSGRLQ NIPVGIPQNI  660
PVGIPTRNPS NLYNQLAKST KPPFDRLMGA TARIPSASLG GGGSYGDVPT GIPVNSNMFG  720
QRGRTSASPV PRQGIVERCS ESKRWRFKKR NGLDSDSESD TEMSADSADS LPPPPLTKRV  780
KIEKEKVVDE KVDKWKELSL VIKRFGEAYE EIENAKLQQF VEMEKTRLKF MKEMELQRMQ  840
FFIKTQMEIS RLKQQQGRRN GVGDTSRDHH HNDENKNNKK NINT

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	218	231	KRSGDSMRWHFRKR

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription regulator that may repress the maturation program during early embryogenesis. {ECO:0000269\|PubMed:21330492}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	AA15G00159

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_188034.1	1e-167	sequence-specific DNA binding transcription factor
Swissprot	Q9LJG8	1e-168	ASIL2_ARATH; Trihelix transcription factor ASIL2
TrEMBL	A0A178V8Z7	1e-165	A0A178V8Z7_ARATH; ASIL2
STRING	AT3G14180.1	1e-166	(Arabidopsis thaliana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6262	25	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G14180.1	1e-125	sequence-specific DNA binding transcription factors