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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AA15G00093 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
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Family | SBP | ||||||||
Protein Properties | Length: 183aa MW: 20734.2 Da PI: 9.365 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 136.7 | 7e-43 | 65 | 141 | 1 | 77 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 +Cqv++C+adl+eak+yhrrhkvCevh+ka++v+v g++qrfCqqCsrfhel efDe+krsCrrrLa+hnerrrk++ AA15G00093 65 MCQVDRCTADLKEAKQYHRRHKVCEVHAKASAVIVVGVSQRFCQQCSRFHELAEFDEAKRSCRRRLAGHNERRRKSS 141 6**************************************************************************87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 1.1E-33 | 59 | 127 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 32.462 | 63 | 140 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 1.28E-38 | 65 | 144 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 1.1E-32 | 66 | 139 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 183 aa Download sequence Send to blast |
MDGKITQGQG YLMSKASVSY LVDEEMENDM DGEDEVGREE EKRKGVMDRV RGASGSGGDR 60 ASSRMCQVDR CTADLKEAKQ YHRRHKVCEV HAKASAVIVV GVSQRFCQQC SRFHELAEFD 120 EAKRSCRRRL AGHNERRRKS SGESFEGSSR RGVTGQLIQN QDRARVEMTL PMSNSSFKRP 180 QIR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 2e-44 | 52 | 139 | 1 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' of AP1 promoter. Promotes both vegetative phase change and flowering. {ECO:0000269|PubMed:10524240, ECO:0000269|PubMed:16914499}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AA15G00093 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Negatively regulated by microRNAs miR156. {ECO:0000269|PubMed:16914499}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013590498.1 | 2e-96 | PREDICTED: squamosa promoter-binding-like protein 4 | ||||
Swissprot | Q9S758 | 2e-84 | SPL5_ARATH; Squamosa promoter-binding-like protein 5 | ||||
TrEMBL | A0A397YVS3 | 3e-98 | A0A397YVS3_BRACM; Squamosa promoter-binding-like protein | ||||
STRING | Bostr.0124s0106.1.p | 1e-103 | (Boechera stricta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM868 | 28 | 118 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G15270.1 | 1e-58 | squamosa promoter binding protein-like 5 |
Publications ? help Back to Top | |||
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