PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AA14G00055

Organism

Aethionema arabicum

Taxonomic ID

228871

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema

Family

C2H2

Protein Properties

Length: 396aa MW: 44103.9 Da PI: 8.8655

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AA14G00055	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.8	1.9e-05	6	28	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C+ C+k F r nL+ H r H AA14G00055 6 FICEVCNKGFQREQNLQLHRRGH 28 89*******************88 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	4.1E-6	5	28	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	3.9E-7	5	28	No hit	No description
PROSITE profile	PS50157	10.99	6	28	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.0052	6	28	IPR015880	Zinc finger, C2H2-like
Pfam	PF12171	1.8E-5	6	28	IPR022755	Zinc finger, double-stranded RNA binding
PROSITE pattern	PS00028	0	8	28	IPR007087	Zinc finger, C2H2
SMART	SM00355	130	48	78	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	1.2E-4	71	104	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	3.9E-7	78	103	No hit	No description
SMART	SM00355	150	83	103	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 396 aa Download sequence Send to blast
MATNRFICEV CNKGFQREQN LQLHRRGHNL PWKLKQKSNK EVTRKKVYLC PEVTCVHHDP 60 SRALGDLTGI KKHYYRKHGE KKWKCEKCSK RYAVQSDCKA HTKTCGTKEY RCDCGTIFSR 120 RDSYITHRAF CEALLQETTR NSTVSFTSMA AANNNGRHEL YNRLDGGISP LSNHLFGNTS 180 NSDFTPLVSS YNLNRPNLDK FEDFGPQSTN LNPNFLMQSQ NNQTNLMNQH GMIQFDPSDL 240 NQTDENHNSN NNNFFNLGFF QENNNENLNV AATSVAATSL LATATSNDDS SGLLRGLTSS 300 TSSNAAIVNG YGGQIGHNGN FQGLMNSLVD HHQSGSSNIF DVQFGNNINM NGESDRLTLD 360 FLGVGRGRGR GGRGGGHVSL DVGIKFLHPN HPFGKT

Sequence ? help Back to Top

Protein Sequence Length: 396 aa Download sequence Send to blast

MATNRFICEV CNKGFQREQN LQLHRRGHNL PWKLKQKSNK EVTRKKVYLC PEVTCVHHDP  60
SRALGDLTGI KKHYYRKHGE KKWKCEKCSK RYAVQSDCKA HTKTCGTKEY RCDCGTIFSR  120
RDSYITHRAF CEALLQETTR NSTVSFTSMA AANNNGRHEL YNRLDGGISP LSNHLFGNTS  180
NSDFTPLVSS YNLNRPNLDK FEDFGPQSTN LNPNFLMQSQ NNQTNLMNQH GMIQFDPSDL  240
NQTDENHNSN NNNFFNLGFF QENNNENLNV AATSVAATSL LATATSNDDS SGLLRGLTSS  300
TSSNAAIVNG YGGQIGHNGN FQGLMNSLVD HHQSGSSNIF DVQFGNNINM NGESDRLTLD  360
FLGVGRGRGR GGRGGGHVSL DVGIKFLHPN HPFGKT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	1e-31	79	145	3	69	Zinc finger protein JACKDAW
5b3h_F	1e-31	79	145	3	69	Zinc finger protein JACKDAW
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	32	45	KLKQKSNKEVTRKK

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that may act a transcriptional activator of nuclear-encoded photosynthetic gene expression (Probable). Binds DNA via its zinc fingers (PubMed:24821766). Recognizes and binds to SCL3 promoter sequence 5'-AGACAA-3' to promotes its expression when in complex with RGA (PubMed:24821766). {ECO:0000269\|PubMed:24821766, ECO:0000305\|PubMed:19726569}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	AA14G00055

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Down-regulated by gibberellin. {ECO:0000305\|PubMed:17933900}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019098995.1	1e-161	PREDICTED: protein indeterminate-domain 6, chloroplastic
Refseq	XP_020869197.1	1e-161	protein indeterminate-domain 6, chloroplastic isoform X1
Refseq	XP_020869198.1	1e-161	protein indeterminate-domain 6, chloroplastic isoform X2
Refseq	XP_020869199.1	1e-161	protein indeterminate-domain 6, chloroplastic isoform X2
Swissprot	Q8GYC1	1e-154	IDD4_ARATH; Protein indeterminate-domain 4, chloroplastic
TrEMBL	A0A397YMC5	1e-157	A0A397YMC5_BRACM; Uncharacterized protein
STRING	Bostr.24340s0006.1.p	1e-156	(Boechera stricta)
STRING	XP_010458962.1	1e-156	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3678	17	59

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G14580.2	1e-123	C2H2-like zinc finger protein

Publications ? help Back to Top
Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755]