PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA13G00049
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family C2H2
Protein Properties Length: 374aa    MW: 40014.6 Da    PI: 9.9386
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA13G00049genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.79.9e-066183123
                EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                ++C++C+k F r  nL+ H r H
  AA13G00049 61 FVCEICNKGFQRDQNLQLHRRGH 83
                89*******************88 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576676.45E-55984No hitNo description
Gene3DG3DSA:3.30.160.601.2E-56083IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF121715.6E-56183IPR022755Zinc finger, double-stranded RNA binding
SMARTSM003550.0176183IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.9496183IPR007087Zinc finger, C2H2
PROSITE patternPS0002806383IPR007087Zinc finger, C2H2
SMARTSM00355240137157IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 374 aa     Download sequence    Send to blast
MPLDLDNSST VSGEASVSST GNQNPTLETT GKKKRNLPGM PDPNSEVISL SPKTLLATNR  60
FVCEICNKGF QRDQNLQLHR RGHNLPWKLR QKSNKEVKKK VYVCPEITCV HHHPSRALGD  120
LTGIKKHFCR KHGEKKWKCE KCCKKYAVQS DWKAHFKICG TKEYKCDCGT LFSRRDSFIT  180
HRAFCDALAE ESVRSHNKKQ SSEILTRKES VPDPKSGAAV KSPDLETVKA VALAANAVDS  240
QSPKAVTIQH SAPSIAATAL LQKAAQMGAT SAGGSLLRGL GIVSSTDDNP GLGLGLPCGS  300
GSSSGLKELM MGNSSMFGPK QTTLDFLGLG RAVSNVGSPG NGLSAIVIGG NGIDLATRFG  360
SGEFTGKDIG RHQS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C2e-33133194364Zinc finger protein JACKDAW
5b3h_F2e-33133194364Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as a positive regulator of gibberellin (GA) action, homeostasis and signaling. GA converts the GAF1 complex from transcriptional activator to repressor via the degradation of DELLA proteins. {ECO:0000269|PubMed:25035403}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00403DAPTransfer from AT3G50700Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA13G00049
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2269331e-164AK226933.1 Arabidopsis thaliana mRNA for zinc finger protein, complete cds, clone: RAFL09-26-M08.
GenBankBT0149471e-164BT014947.1 Arabidopsis thaliana At3g50700 gene, complete cds.
GenBankBT0158361e-164BT015836.1 Arabidopsis thaliana At3g50700 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009115732.10.0PREDICTED: protein indeterminate-domain 2
SwissprotQ9SCQ60.0IDD2_ARATH; Zinc finger protein GAI-ASSOCIATED FACTOR 1
TrEMBLA0A087GWR50.0A0A087GWR5_ARAAL; Uncharacterized protein
STRINGA0A087GWR50.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15528306
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50700.11e-164indeterminate(ID)-domain 2
Publications ? help Back to Top
  1. Fukazawa J, et al.
    DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis.
    Plant Cell, 2014. 26(7): p. 2920-38
    [PMID:25035403]
  2. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]
  3. Khare D, et al.
    Root avoidance of toxic metals requires the GeBP-LIKE 4 transcription factor in Arabidopsis thaliana.
    New Phytol., 2017. 213(3): p. 1257-1273
    [PMID:27768815]