PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AA12G00124 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
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Family | B3 | ||||||||
Protein Properties | Length: 223aa MW: 26058.3 Da PI: 5.8579 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 31 | 4.5e-10 | 2 | 79 | 17 | 98 |
E--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 17 vlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 ++pk+f ++ g +++ +++ ++g+sW++ l r+ ++ y+++k W++Fv++n L ++ +++F++++++ f l+v++f+ AA12G00124 2 YIPKEFEKSKpeGFDEN---RVVISVLWGNSWQLWL--RRDIKGlYMIEKDWNGFVDDNLLGQNHILLFTHEDTM-F-LRVQFFK 79 69999987777544433...599999**********..6666666*************************86633.3.5777776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50863 | 11.843 | 1 | 81 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 0.0016 | 1 | 81 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 9.9E-8 | 2 | 79 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 4.00E-10 | 2 | 79 | No hit | No description |
Gene3D | G3DSA:2.40.330.10 | 1.6E-10 | 2 | 81 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 8.24E-12 | 2 | 81 | IPR015300 | DNA-binding pseudobarrel domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 223 aa Download sequence Send to blast |
RYIPKEFEKS KPEGFDENRV VISVLWGNSW QLWLRRDIKG LYMIEKDWNG FVDDNLLGQN 60 HILLFTHEDT MFLRVQFFKQ DGTEIITPPH ESVPGTHPES DPETDPESDP EPEAEILHPR 120 PQDSHQETTP EPASGGRARQ GSILVKEREQ YMRYLKNPKN PFFVQIILRR NRQLYVSRSV 180 IKDYNLTFGD KIEYLLPHGT VEGITKYYNG HPCFNGWAGL VYV |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AA12G00124 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020876196.1 | 2e-58 | B3 domain-containing protein At5g25475 | ||||
Refseq | XP_020876197.1 | 2e-58 | B3 domain-containing protein At5g25475 | ||||
Refseq | XP_020876198.1 | 2e-58 | B3 domain-containing protein At5g25475 | ||||
Refseq | XP_020876199.1 | 2e-58 | B3 domain-containing protein At5g25475 | ||||
TrEMBL | D7M3Z6 | 4e-57 | D7M3Z6_ARALL; Uncharacterized protein | ||||
STRING | Bostr.29827s0261.1.p | 2e-61 | (Boechera stricta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4491 | 16 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G25475.3 | 2e-54 | B3 family protein |