PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA12G00113
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family B3
Protein Properties Length: 459aa    MW: 53916.9 Da    PI: 7.0116
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA12G00113genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B331.62.9e-103254091098
                 HHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
          B3  10 vlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                   ++++ ++pk+f ++   g +   +k +++  ++g+sW++ l  r+  ++ ++++k W++Fv++n L ++ +++F++++++ f l+v++f+
  AA12G00113 325 WKSKSMRYIPKEFEKSKpeGFD---EKRVVISVLWGNSWQLWL--RRDIKGlFMIEKDWNGFVDDNLLGQNHILLFTHEDTM-F-LRVQFFK 409
                 45667789*****877775333...34699999**********..6666666*************************86633.3.4777775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.06E-1214115IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.106.5E-1115115IPR015300DNA-binding pseudobarrel domain
CDDcd100172.72E-1017113No hitNo description
SMARTSM010195.1E-1119115IPR003340B3 DNA binding domain
PROSITE profilePS5086310.17920115IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.106.2E-6189273IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.51E-8189272IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.033195282IPR003340B3 DNA binding domain
SuperFamilySSF1019364.12E-14309410IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.105.5E-12309411IPR015300DNA-binding pseudobarrel domain
CDDcd100176.83E-12313409No hitNo description
SMARTSM010191.1E-9315411IPR003340B3 DNA binding domain
PROSITE profilePS5086310.828316411IPR003340B3 DNA binding domain
PfamPF023624.1E-8326409IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 459 aa     Download sequence    Send to blast
METKSVIDKI RENASRPSFV KFLSQGEEWK SKPMRYIPEE FEKSKPEGFD ENRVVISVLW  60
GNSWQLWLRR DIKGLYMIEK DWNGFVDDNL LGQNHILLFT HEDTMFLRVQ FFKQDGTEII  120
MPPHQRATDP KHDPETDHES EAELLHPSPQ DSRQKTTPAP ASRIGGRARQ GNTQVKDRER  180
EQYMRYLKNP NNPFFVKTIK KNDKVLYVSR LVIKKHNLTF GEKIKYLFPQ GKEEGITKYY  240
DGPYPCYSGW NVLCRKYDLE PESTVVCELE HTNGLVTAVR GLTIEGDGRA LREIRKVDNM  300
SLFEKMRENS SKPSFIKYLT RGEDWKSKSM RYIPKEFEKS KPEGFDEKRV VISVLWGNSW  360
QLWLRRDIKG LFMIEKDWNG FVDDNLLGQN HILLFTHEDT MFLRVQFFKE DGTEIILPPH  420
ERATDPKPDP ETDHESEAEL LHPSPQDTRQ KKTLDPATX
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA12G00113
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020876196.13e-83B3 domain-containing protein At5g25475
RefseqXP_020876197.13e-83B3 domain-containing protein At5g25475
RefseqXP_020876198.13e-83B3 domain-containing protein At5g25475
RefseqXP_020876199.13e-83B3 domain-containing protein At5g25475
TrEMBLD7M3Z67e-82D7M3Z6_ARALL; Uncharacterized protein
STRINGBostr.29827s0261.1.p5e-85(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM44911645
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25475.31e-76B3 family protein