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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AA1278G00001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
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Family | WRKY | ||||||||
Protein Properties | Length: 240aa MW: 27078.8 Da PI: 8.6694 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 96.8 | 1.4e-30 | 123 | 182 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 ++Dg++WrKYGqK+ kg+++pr+YYrCt + gCpv+k+v+r+ ed +++++tYeg+Hnh+ AA1278G00001 123 MNDGCQWRKYGQKTAKGNPCPRAYYRCTVSqGCPVRKQVQRCLEDMSILITTYEGTHNHT 182 58**************************998****************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 5.5E-33 | 108 | 184 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 6.8E-28 | 116 | 184 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 29.252 | 118 | 184 | IPR003657 | WRKY domain |
SMART | SM00774 | 9.3E-37 | 123 | 183 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.3E-27 | 124 | 181 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 240 aa Download sequence Send to blast |
MAGEQILQLQ KEMEHVKQEN ISLRNLVEQT LQDYRSLEMK FPVFIAKPKK FMDLEAFVGE 60 QGKRCSSLSL EQGELGLSLS VRSEESVIRE KKRDENTPRV ISSSPANRKA RVSVRARCET 120 ATMNDGCQWR KYGQKTAKGN PCPRAYYRCT VSQGCPVRKQ VQRCLEDMSI LITTYEGTHN 180 HTLPVGATAM ASTTTTSMSP FLLLDSSDSL SHNSMSFSFD HSSTRPDYVS SSQNTLTWMM |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 3e-24 | 110 | 186 | 1 | 76 | WRKY transcription factor 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AA1278G00001 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by potassium deprivation. {ECO:0000269|PubMed:15173595}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006391179.1 | 1e-108 | probable WRKY transcription factor 9 | ||||
Swissprot | Q9C9F0 | 1e-106 | WRKY9_ARATH; Probable WRKY transcription factor 9 | ||||
TrEMBL | A0A3P6BRV8 | 1e-109 | A0A3P6BRV8_BRACM; Uncharacterized protein (Fragment) | ||||
STRING | XP_006391179.1 | 1e-108 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6736 | 27 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68150.1 | 1e-83 | WRKY DNA-binding protein 9 |