PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AA11G00061

Organism

Aethionema arabicum

Taxonomic ID

228871

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema

Family

HD-ZIP

Protein Properties

Length: 160aa MW: 18460.9 Da PI: 8.6993

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AA11G00061	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	58.4	1.2e-18	10	64	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+ ++t++q++ Le+ F n++++ e + +L+++l+L+ +qV vWFqN+Ra+ k AA11G00061 10 NKKKRLTQDQVKHLEKSFILNKKLDPELKLQLSNQLNLPPKQVAVWFQNKRARSK 64 67788************************************************99 PP
2	HD-ZIP_I/II	99.6	2.9e-32	10	102	1	93
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 +kk+rl+++qvk LE+sF ++kL+pe K +l+++L+l p+qvavWFqn+RAR kt+ lE +++ L+++++a +en++L+++v+ L+eelk+ AA11G00061 10 NKKKRLTQDQVKHLEKSFILNKKLDPELKLQLSNQLNLPPKQVAVWFQNKRARSKTQSLELQHNNLQTKLEATLSENNKLQHQVQFLQEELKK 102 59****************************************************************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	16.601	6	66	IPR001356	Homeobox domain
SuperFamily	SSF46689	7.7E-18	6	67	IPR009057	Homeodomain-like
SMART	SM00389	1.1E-16	8	70	IPR001356	Homeobox domain
CDD	cd00086	3.44E-15	9	67	No hit	No description
Pfam	PF00046	3.7E-16	10	64	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	7.5E-17	12	71	IPR009057	Homeodomain-like
PROSITE pattern	PS00027	0	41	64	IPR017970	Homeobox, conserved site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009637	Biological Process	response to blue light
GO:0009646	Biological Process	response to absence of light
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 160 aa Download sequence Send to blast
MEIPHTEIKN KKKRLTQDQV KHLEKSFILN KKLDPELKLQ LSNQLNLPPK QVAVWFQNKR 60 ARSKTQSLEL QHNNLQTKLE ATLSENNKLQ HQVQFLQEEL KKTKYELALF TNRRSNDLSP 120 VDNSNLGSCE EGVDDQVVVY DELYACFVSN GHGSSSASWV

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	AA11G00061

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020879304.1	2e-79	homeobox-leucine zipper protein ATHB-52
Swissprot	Q9FN29	3e-78	ATB52_ARATH; Homeobox-leucine zipper protein ATHB-52
TrEMBL	D7MTN0	6e-78	D7MTN0_ARALL; ATHB52
STRING	fgenesh2_kg.8__1293__AT5G53980.1	1e-78	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM12107	26	32

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G53980.1	1e-80	homeobox protein 52