PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA116G00003
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family B3
Protein Properties Length: 535aa    MW: 61658.1 Da    PI: 8.4316
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA116G00003genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3314.4e-1094176276
                  EEE-..-HHHHT.T-EE--HHH.HTT........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--T CS
           B3   2 fkvltpsdvlks.grlvlpkkfaeeh........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLke 76 
                  fk+lt sdv+   +rl+l kk +++         +++ +e++++ ++ ++g++ e+k++++ k  + vl++GW++Fvka gL+ 
  AA116G00003  94 FKQLTESDVNGGqCRLMLGKKEVKDKflsrlkesEIPGTEGVDVLVYGPDGNVHELKFKIWIKN-TPVLANGWSKFVKAYGLEK 176
                  799*****98777**********9999*9998886666799**********9999999888885.679**************85 PP
2B339.88.1e-13200290281
                  EEE-..-HHHHT.T-EE--HHH.HTT...........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--.TT-EEE CS
           B3   2 fkvltpsdvlks.grlvlpkkfaeeh...........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLk.egDfvv 81 
                  fk+l+ sdv  s +rlvl +k ++eh           ++k  +++++ ++ ++g+++e+k++++ + ++ +ltkGW++F ka +Lk   D++ 
  AA116G00003 200 FKQLSESDVDGSkCRLVLENKQVKEHffclleeseipSLK--QGVDVLVYGPDGKVYEMKFKIQIQTSTPMLTKGWSKFLKAYKLKkYSDVLK 290
                  799*****98766****************99887665444..899****************9999999*****************95566664 PP
3B338.81.6e-12389476280
                  EEE-..-HHHHTT-EE--HHH.HTT...........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--.TT-EE CS
           B3   2 fkvltpsdvlksgrlvlpkkfaeeh...........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLk.egDfv 80 
                  fk+lt sd +++ rl+l kk +e+h           g +  +++++ ++ ++g+++e+k++++ + g+ +ltkGW +Fv+a +L+   D++
  AA116G00003 389 FKQLTESDGGQH-RLMLGKKQVEDHficdleeseilGVV--QGIDVLVYGPDGKVYEMKFKIQIGTGTPMLTKGWGKFVEAYELQkYSDVL 476
                  799988888877.6**************87766654333..999****************************************9445555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.2E-1291177IPR015300DNA-binding pseudobarrel domain
CDDcd100171.80E-1291175No hitNo description
SuperFamilySSF1019362.55E-1292181IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.00793199IPR003340B3 DNA binding domain
PROSITE profilePS508636.56994199IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.107.6E-15197298IPR015300DNA-binding pseudobarrel domain
CDDcd100171.28E-15197306No hitNo description
SuperFamilySSF1019366.47E-14198297IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.014200306IPR003340B3 DNA binding domain
PROSITE profilePS508638.811200310IPR003340B3 DNA binding domain
PfamPF023627.4E-8200292IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.108.2E-12386493IPR015300DNA-binding pseudobarrel domain
CDDcd100178.69E-16386493No hitNo description
SuperFamilySSF1019361.29E-12387485IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.0036388493IPR003340B3 DNA binding domain
PfamPF023626.7E-8389476IPR003340B3 DNA binding domain
PROSITE profilePS508638.205431497IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 535 aa     Download sequence    Send to blast
MMTQDSSSSS SPNNESKGNN VEQENPKATA LIKKPESVIK KQEKPRKVVE FDDREETLQL  60
VLQQLNNGNR ENIPPPNRII SKIPNEVEFS RCVFKQLTES DVNGGQCRLM LGKKEVKDKF  120
LSRLKESEIP GTEGVDVLVY GPDGNVHELK FKIWIKNTPV LANGWSKFVK AYGLEKYRNV  180
VKIWMFKASE DVVEFSRCIF KQLSESDVDG SKCRLVLENK QVKEHFFCLL EESEIPSLKQ  240
GVDVLVYGPD GKVYEMKFKI QIQTSTPMLT KGWSKFLKAY KLKKYSDVLK IWMFKTNEDG  300
KICFAIDSIR FDDITKPLSK RILKNVFQNI QETKNMAKDK PRKFVEFEDR EETLQLLLQH  360
LNNEDREIPP PNRIVSKIPK EVEFSRCIFK QLTESDGGQH RLMLGKKQVE DHFICDLEES  420
EILGVVQGID VLVYGPDGKV YEMKFKIQIG TGTPMLTKGW GKFVEAYELQ KYSDVLKIWM  480
FRASEDGKIC FVIDSIRFDD ITKPLSTRIL KNVFKNFQET KNMAKEDSDS SSSDV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13246KKPESVIKKQEKPRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA116G00003
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
SwissprotQ9ZR141e-26Y4317_ARATH; Putative B3 domain-containing protein At4g03170
TrEMBLM4DKJ89e-34M4DKJ8_BRARP; Uncharacterized protein
STRINGBra017028.1-P2e-34(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM21031835
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G03170.18e-29B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]