PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA10G00418
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family HD-ZIP
Protein Properties Length: 317aa    MW: 36989.7 Da    PI: 6.286
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA10G00418genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox53.44.2e-17110162456
                 -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
    Homeobox   4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                 + +++ eq+++Le+ Fe  +++  e++ +LAk lg++ rq+ +WFqNrRa++k
  AA10G00418 110 KKRLQLEQVKALEKSFELGNKLEPERKLQLAKALGMQPRQIAIWFQNRRARWK 162
                 4457889*********************************************9 PP
2HD-ZIP_I/II123.31.1e-39108199192
  HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                  ekk+rl+ eqvk+LE+sFe  +kLeperK +la++Lg+qprq+a+WFqnrRAR+kt+qlE+dye+Lk+++d+lk++ne+L +++++L +e++
   AA10G00418 108 EKKKRLQLEQVKALEKSFELGNKLEPERKLQLAKALGMQPRQIAIWFQNRRARWKTRQLERDYESLKKQFDSLKSDNESLLAQNNKLLAEVM 199
                  69*************************************************************************************99886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.46E-18100166IPR009057Homeodomain-like
SMARTSM003891.4E-15107168IPR001356Homeobox domain
PROSITE profilePS5007116.018108164IPR001356Homeobox domain
CDDcd000863.70E-14109165No hitNo description
PfamPF000462.1E-14110162IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.2E-17112172IPR009057Homeodomain-like
PRINTSPR000313.5E-5135144IPR000047Helix-turn-helix motif
PROSITE patternPS000270139162IPR017970Homeobox, conserved site
PRINTSPR000313.5E-5144160IPR000047Helix-turn-helix motif
PfamPF021831.0E-14165205IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009733Biological Processresponse to auxin
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    Send to blast
MYLYDPTTDA DADADSATRL RLEMAFPQNG FMFQQLHEDN NEQLPSCPPP PPILFNGGNY  60
MMNRSMSLSN VQEDHHHHHH HQHQHHNHQS IDQEENLSDD GSHMMLGEKK KRLQLEQVKA  120
LEKSFELGNK LEPERKLQLA KALGMQPRQI AIWFQNRRAR WKTRQLERDY ESLKKQFDSL  180
KSDNESLLAQ NNKLLAEVMV LKKKESNNEG NIIKREVTEA SWSNNGSTDN SSDINLEMPT  240
HVNIIKDLFP SSIIRSSTTH HDHTDDDDHH QNHHHHEMVN QEESFCNMFN GIDETTSAGY  300
WAWPDPHHNH HNNNQFN
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00322DAPTransfer from AT3G01220Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA10G00418
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin. {ECO:0000269|PubMed:12644682}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010463554.11e-154PREDICTED: homeobox-leucine zipper protein ATHB-20 isoform X1
RefseqXP_010463555.11e-154PREDICTED: homeobox-leucine zipper protein ATHB-20 isoform X2
RefseqXP_010485524.11e-154PREDICTED: homeobox-leucine zipper protein ATHB-20-like
SwissprotQ8LAT01e-151ATB20_ARATH; Homeobox-leucine zipper protein ATHB-20
TrEMBLA0A1J3CZL51e-153A0A1J3CZL5_NOCCA; Homeobox-leucine zipper protein ATHB-20
STRINGBostr.1460s0094.1.p1e-158(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM30952666
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01220.11e-139homeobox protein 20