PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA10G00035
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family M-type_MADS
Protein Properties Length: 200aa    MW: 23285.8 Da    PI: 8.7787
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA10G00035genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF50.62.5e-161147339
                --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEE CS
      SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevavii 39
                i+n+ +r +tf kR++g+lKK +E+S+LCd+e++ +i
  AA10G00035 11 ISNDAKRRTTFNKRKKGLLKKLKEISILCDVEACAMI 47
                99********************************877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006617.353147IPR002100Transcription factor, MADS-box
SuperFamilySSF554559.68E-22184IPR002100Transcription factor, MADS-box
SMARTSM004321.8E-20160IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-9323IPR002100Transcription factor, MADS-box
PfamPF003193.5E-151153IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-92338IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-93859IPR002100Transcription factor, MADS-box
Gene3DG3DSA:1.20.5.1706.0E-478119No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 200 aa     Download sequence    Send to blast
MGKKKLNLIY ISNDAKRRTT FNKRKKGLLK KLKEISILCD VEACAMIQDP YKKTEEIWPS  60
DSEMKAIVEK FETFSDNNSR KKMVSHQEFL QESVLKLEKQ NRNMAKEVND LSMKLRMFRC  120
LDGTENPKNL NDDDREGFIK YVRKYIEALS IRKQFLLDER SAAAAVNIGP SSEVNFEIPD  180
LNLNPKEEET VMVKIEKADE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11631RRTTFNKRKKGLLKKL
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA10G00035
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM7028415
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G05860.29e-35M-type_MADS family protein