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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AA1098G00001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
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Family | CAMTA | ||||||||
Protein Properties | Length: 970aa MW: 109227 Da PI: 5.8677 | ||||||||
Description | CAMTA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CG-1 | 174.1 | 1.9e-54 | 13 | 129 | 2 | 117 |
CG-1 2 lke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqrr 97 ++e ++rwlk+ e++ iL+n+e+++l ++++++p+sgsl+L+n++++++frkDG++w++kkdg+++ E+he+LKvg+ve+l+cyYah+e+nptfqrr AA1098G00001 13 YQEaHNRWLKPPEVYFILQNHERYQLNHKTPQNPTSGSLLLFNKRVLKFFRKDGHQWRRKKDGRAIAEAHERLKVGTVEALNCYYAHGEHNPTFQRR 109 566699******************************************************************************************* PP CG-1 98 cywlLeeelekivlvhylev 117 +yw+L+ ++e+ivlvhy++v AA1098G00001 110 IYWMLDPAYEHIVLVHYRDV 129 ******************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51437 | 76.637 | 9 | 135 | IPR005559 | CG-1 DNA-binding domain |
SMART | SM01076 | 2.8E-75 | 12 | 130 | IPR005559 | CG-1 DNA-binding domain |
Pfam | PF03859 | 1.1E-46 | 15 | 129 | IPR005559 | CG-1 DNA-binding domain |
Gene3D | G3DSA:2.60.40.10 | 5.7E-9 | 401 | 492 | IPR013783 | Immunoglobulin-like fold |
SuperFamily | SSF81296 | 1.71E-17 | 407 | 491 | IPR014756 | Immunoglobulin E-set |
CDD | cd00102 | 1.29E-4 | 407 | 492 | No hit | No description |
Pfam | PF01833 | 6.0E-8 | 408 | 490 | IPR002909 | IPT domain |
Gene3D | G3DSA:1.25.40.20 | 4.6E-16 | 602 | 698 | IPR020683 | Ankyrin repeat-containing domain |
SuperFamily | SSF48403 | 2.33E-16 | 603 | 699 | IPR020683 | Ankyrin repeat-containing domain |
PROSITE profile | PS50297 | 16.733 | 604 | 696 | IPR020683 | Ankyrin repeat-containing domain |
CDD | cd00204 | 2.09E-15 | 609 | 696 | No hit | No description |
Pfam | PF12796 | 1.6E-7 | 610 | 697 | IPR020683 | Ankyrin repeat-containing domain |
PROSITE profile | PS50088 | 10.526 | 637 | 669 | IPR002110 | Ankyrin repeat |
SMART | SM00248 | 0.018 | 637 | 666 | IPR002110 | Ankyrin repeat |
SMART | SM00248 | 1800 | 676 | 705 | IPR002110 | Ankyrin repeat |
SMART | SM00015 | 59 | 750 | 772 | IPR000048 | IQ motif, EF-hand binding site |
PROSITE profile | PS50096 | 8.114 | 751 | 779 | IPR000048 | IQ motif, EF-hand binding site |
SuperFamily | SSF52540 | 4.25E-9 | 751 | 859 | IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
SMART | SM00015 | 0.39 | 807 | 829 | IPR000048 | IQ motif, EF-hand binding site |
PROSITE profile | PS50096 | 8.334 | 808 | 837 | IPR000048 | IQ motif, EF-hand binding site |
Pfam | PF00612 | 0.0038 | 809 | 828 | IPR000048 | IQ motif, EF-hand binding site |
SMART | SM00015 | 2.3E-4 | 830 | 852 | IPR000048 | IQ motif, EF-hand binding site |
PROSITE profile | PS50096 | 8.993 | 831 | 855 | IPR000048 | IQ motif, EF-hand binding site |
Pfam | PF00612 | 1.2E-5 | 833 | 852 | IPR000048 | IQ motif, EF-hand binding site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 970 aa Download sequence Send to blast |
MQSVPEFDIN TLYQEAHNRW LKPPEVYFIL QNHERYQLNH KTPQNPTSGS LLLFNKRVLK 60 FFRKDGHQWR RKKDGRAIAE AHERLKVGTV EALNCYYAHG EHNPTFQRRI YWMLDPAYEH 120 IVLVHYRDVS EGKEGKLSSG KALQFSPNAS ILFSSPSSID TQNTNYNLYT SDVIDRHQLS 180 SSSPATAETN SEVVYKTTGV ETPGDSTTSS SEFEVRKALK RLEEQLSIGD DTVATLDELY 240 IQEESLDNLQ VLECSKEINH FNQPVMTVHH RSENNKLERC YGGYVGTQYH SNNLMLEKND 300 SGGKGVRGEQ ESGSWKDVLE ACEAPRVLNF ECGSTANSSK GLQQNSNWSY SSQIDQSTLL 360 LPQDLASFEV PACYSALEDH KNNGEYCRMM DEEDNIDLPL EQTKKFTILD LAPEWGYSDE 420 TTKVIIVGSF LCDPRQSTWS CMFGDTEVPF EIIKEGVLRC EAPPHRPGKV TLSITSGDRV 480 SCSEVITFEY RDKAMTCFPR SILPQTCDIS TSPDELLLLV KFVQSLLVDP LSDSKNNTKQ 540 DTDKLLKKLK ADDDQWIEAI FDAEAASSTT VNWLLQELLK DKLDVWLSSR SKDKDQVFCS 600 LSKQEQGIIH MAAGLGFEWA LYPILDHGVS VDFRDITGRS ALHWAARFGR EKMVAALIAC 660 GASAGAVTDP TSQDSDGKTA ASIAASNGHK GLAGYLSEVA LTNHLSSLTL EETKISIDSA 720 QVQAEITVSS MSEPSLPCNE DEISLAAVRN AAQAAARIQA AFRAHSFRKR KQREAAMDSC 780 FKEYGIYCRD IEGMTAISKL VSRNSRNYHS AALSIQKKYR GYKDRKDFLS LREKVVKIQA 840 HVRGYQVRKH YKVICWAVGI LDKVVLRWRR KGAGLRGFRQ DVEATEDSED DDILKVFRKK 900 KVDGAVNEAF SRVLSMANSP EARQQYHRVL KRYCQTKAEL GKTETLGEEE DEDGLFDIAD 960 MENDDLFSLP |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved together with CAMTA2 and CAMTA3 in the positive regulation of a general stress response (PubMed:25039701). {ECO:0000250|UniProtKB:Q8GSA7, ECO:0000269|PubMed:25039701, ECO:0000305|PubMed:11925432}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AA1098G00001 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By heat shock, UVB, salt, wounding, ethylene, methyl jasmonate, abscisic acid, H(2)O(2) and salicylic acid (PubMed:12218065). Induced by cold stress (PubMed:28351986). {ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:28351986}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020890717.1 | 0.0 | calmodulin-binding transcription activator 4 isoform X1 | ||||
Swissprot | Q9FYG2 | 0.0 | CMTA4_ARATH; Calmodulin-binding transcription activator 4 | ||||
TrEMBL | A0A087HG81 | 0.0 | A0A087HG81_ARAAL; Uncharacterized protein | ||||
STRING | A0A087HG81 | 0.0 | (Arabis alpina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6476 | 26 | 42 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G67310.1 | 0.0 | Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains |
Publications ? help Back to Top | |||
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