PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 99494
Common NameMICPUN_99494
Organism
Micromonas sp. RCC299
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas
Family C3H
Protein Properties Length: 663aa    MW: 73296.4 Da    PI: 7.3955
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
99494genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH253.2e-0887108426
              ---SGGGGTS--TTTTT-SS-SS CS
  zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
               lC+ f++ G C +Gd+C+++H 
    99494  87 DLCSAFSK-GACTFGDKCRYSHN 108
              69******.*************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.10883110IPR000571Zinc finger, CCCH-type
SMARTSM003563.1E-483109IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.49E-585108IPR000571Zinc finger, CCCH-type
PfamPF006426.6E-687108IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.2E-587110IPR000571Zinc finger, CCCH-type
SMARTSM0035628120148IPR000571Zinc finger, CCCH-type
PROSITE profilePS501038.202123149IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:3.20.20.701.3E-70302546IPR013785Aldolase-type TIM barrel
CDDcd028019.97E-95306542No hitNo description
SuperFamilySSF513953.22E-62306618No hitNo description
PfamPF012073.2E-50309549IPR001269tRNA-dihydrouridine synthase
PROSITE patternPS011360394412IPR018517tRNA-dihydrouridine synthase, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0002943Biological ProcesstRNA dihydrouridine synthesis
GO:0055114Biological Processoxidation-reduction process
GO:0017150Molecular FunctiontRNA dihydrouridine synthase activity
GO:0046872Molecular Functionmetal ion binding
GO:0050660Molecular Functionflavin adenine dinucleotide binding
Sequence ? help Back to Top
Protein Sequence    Length: 663 aa     Download sequence    Send to blast
MSEFTGPDGK PWVPPTADDL IAKGSAAVKT EYLRPVPPLA DTNANVVDDD KAEAGKRGDG  60
GVDKKRTGKS RRALAREKKQ ARESGADLCS AFSKGACTFG DKCRYSHNVE SYLRAKQPDL  120
PGACPFIAAG KDKCPHGIMC RYLGTHPPVP DTEENKLLPA LTPQTTAELK ERNAAPGVNE  180
GVLELPVPES PGGPFGPDDE MNQFCGWLKV RLRKGQVRFD KADAVLKELG VESSWRYGKE  240
GDEKLRKKYG EKKDVVDPGE GGGDETREDD DEGGGKRSKV DPDNTAEGVD VKLRPVEKKT  300
IDFRGKLYLA PLTTTGNLPF RRICKRYGVD ITCGEMAMVT NLLQGQPAEW ALLRRHPSED  360
IFGAQVCGGY SDSMSRCMQL LEDEVVSKGG LDFIDINMGC PIDLVCNKGA GSMLLEKPAR  420
MEQLVRASAP LLSCPLTLKT RMGYFDNKRV AHEIIPKMVD WGLAGMTLHG RSRQQRYSRL  480
ADWDYINQCA RASPIQLIGN GDVFSYHDYV KNVEGQGVAT CMIARGALIK PWIFTEIKER  540
RDWDISATER LDMLKDYAAF GLEHWGADAR GVANTRRFLL EWLSFLHRYV PVGLLERMPV  600
GIHQRPPNYV GRSDLETLLS SPNSEDWVKI TTMLLGPTPD NFSFQPKHKS NAYSKESDQV  660
QG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ei9_A3e-2430354227261tRNA-dihydrouridine synthase B
6ei9_B3e-2430354227261tRNA-dihydrouridine synthase B
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0013240.0CP001324.1 Micromonas sp. RCC299 chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002500968.10.0predicted protein
TrEMBLC1E1T80.0C1E1T8_MICCC; tRNA-dihydrouridine(47) synthase [NAD(P)(+)]
STRINGXP_002500968.10.0(Micromonas sp. RCC299)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP58777
Publications ? help Back to Top
  1. Worden AZ, et al.
    Green evolution and dynamic adaptations revealed by genomes of the marine picoeukaryotes Micromonas.
    Science, 2009. 324(5924): p. 268-72
    [PMID:19359590]