PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 9855
Common NameMICPUCDRAFT_9855
Organism
Micromonas pusilla CCMP1545
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas; Micromonas pusilla
Family C3H
Protein Properties Length: 63aa    MW: 7455.54 Da    PI: 9.102
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
9855genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH50.92.4e-16127127
             --S---SGGGGTS--TTTTT-SS-SSS CS
  zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
             yktelCr + +tG C+yG +C+FaHg+
     9855  1 YKTELCRSWEETGACRYGVKCQFAHGR 27
             9************************96 PP
2zf-CCCH47.52.8e-153963125
             --S---SGGGGTS--TTTTT-SS-S CS
  zf-CCCH  1 yktelCrffartGtCkyGdrCkFaH 25
             ykte Cr+fa++GtC+yG rC+F+H
     9855 39 YKTEVCRTFAQNGTCPYGTRCRFIH 63
             9************************ PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF006422.2E-13127IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.3E-19133IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.84E-11132IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.629128IPR000571Zinc finger, CCCH-type
SMARTSM003565.6E-7127IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.4E-153463IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.53E-103563IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.6853863IPR000571Zinc finger, CCCH-type
SMARTSM003561.8E-53863IPR000571Zinc finger, CCCH-type
PfamPF006426.4E-123963IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0051511Biological Processnegative regulation of unidimensional cell growth
GO:1901347Biological Processnegative regulation of secondary cell wall biogenesis
GO:0003729Molecular FunctionmRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 63 aa     Download sequence    Send to blast
YKTELCRSWE ETGACRYGVK CQFAHGRDEL RPVLRHPKYK TEVCRTFAQN GTCPYGTRCR  60
FIH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1rgo_A2e-27163466Butyrate response factor 2
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002499452.13e-38predicted protein
RefseqXP_003055756.15e-41predicted protein, partial
SwissprotQ5ISE26e-29Z36L3_MOUSE; mRNA decay activator protein ZFP36L3
TrEMBLA0A2P6THQ84e-39A0A2P6THQ8_CHLSO; Ankyrin repeat domain-containing 13C isoform A
TrEMBLA0A2P6THR34e-39A0A2P6THR3_CHLSO; Ankyrin repeat domain-containing 13C isoform B
TrEMBLC1MJ131e-39C1MJ13_MICPC; Predicted protein (Fragment)
STRINGXP_002499452.11e-37(Micromonas sp. RCC299)
STRINGXP_003055756.12e-40(Micromonas pusilla)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP36231314
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66810.11e-28C3H family protein
Publications ? help Back to Top
  1. Worden AZ, et al.
    Green evolution and dynamic adaptations revealed by genomes of the marine picoeukaryotes Micromonas.
    Science, 2009. 324(5924): p. 268-72
    [PMID:19359590]