PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

93535

Organism

Ostreococcus lucimarinus

Taxonomic ID

242159

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus

Family

MYB_related

Protein Properties

Length: 436aa MW: 48424.5 Da PI: 8.5912

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
93535	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	23.2	1.6e-07	378	429	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT......TTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg......kgRtlkqcksrwqk 46 + +WT E l +v+++G g+W++I + + Rt+ ++k++w++ 93535 378 KVKWTDAEVTCLHLGVQKYGIGNWAKILNDPTltngfhTSRTGVHLKDKWRT 429 579*************************99999*************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00717	0.0011	377	433	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	2.11E-12	377	430	IPR009057	Homeodomain-like
PROSITE profile	PS50090	6.33	378	431	IPR017877	Myb-like domain
Gene3D	G3DSA:1.10.10.60	4.6E-11	378	431	IPR009057	Homeodomain-like
CDD	cd11660	1.54E-18	379	432	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 436 aa Download sequence Send to blast
MQRRERALWS LEHALSSPEI PLDVKVEVKN ACAASLDDET LASCDSLVVR LFDVLSRARD 60 ALIAGEGAMR GNSARACADA LHAVTTRRDA PETLKRRGKD VVEALRGEWC FAAARETRNE 120 GGTSPVRGWK AMENFWMRWR TLTIGDGGLG DGSALGTKAK RTYDMVERAE SDMRLPSDWE 180 SRVPTAEDIA QDLQTLFTDL CESGELMSFL SVVRNDISSG RYKVQVRGDG RVARQSGAMT 240 DSIGLEPHLE GLGRKLRAEA TRHRQEPPLG ALTAVPESFS SPPKRVHIAA QRKKNARTVE 300 WDSQNDQPDD NDKEEEDKDE HEDIAPTQQT PRAKPSPLTN LSWEEVGYRT PRANLPAISP 360 APRAALKSPS TRKKLHVKVK WTDAEVTCLH LGVQKYGIGN WAKILNDPTL TNGFHTSRTG 420 VHLKDKWRTI QRQAR*

Sequence ? help Back to Top

Protein Sequence Length: 436 aa Download sequence Send to blast

MQRRERALWS LEHALSSPEI PLDVKVEVKN ACAASLDDET LASCDSLVVR LFDVLSRARD  60
ALIAGEGAMR GNSARACADA LHAVTTRRDA PETLKRRGKD VVEALRGEWC FAAARETRNE  120
GGTSPVRGWK AMENFWMRWR TLTIGDGGLG DGSALGTKAK RTYDMVERAE SDMRLPSDWE  180
SRVPTAEDIA QDLQTLFTDL CESGELMSFL SVVRNDISSG RYKVQVRGDG RVARQSGAMT  240
DSIGLEPHLE GLGRKLRAEA TRHRQEPPLG ALTAVPESFS SPPKRVHIAA QRKKNARTVE  300
WDSQNDQPDD NDKEEEDKDE HEDIAPTQQT PRAKPSPLTN LSWEEVGYRT PRANLPAISP  360
APRAALKSPS TRKKLHVKVK WTDAEVTCLH LGVQKYGIGN WAKILNDPTL TNGFHTSRTG  420
VHLKDKWRTI QRQAR*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CP000592	0.0	CP000592.1 Ostreococcus lucimarinus CCE9901 chromosome 12, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_001420640.1	0.0	predicted protein
TrEMBL	A4S5N4	0.0	A4S5N4_OSTLU; Uncharacterized protein
STRING	ABO98933	0.0	(Ostreococcus 'lucimarinus')

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP13469	3	3

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G49850.1	6e-09	telomere repeat binding factor 3

Link Out ? help Back to Top
Phytozome	93535