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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 93509 | ||||||||
Common Name | SELMODRAFT_93509 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
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Family | C2H2 | ||||||||
Protein Properties | Length: 146aa MW: 16986.7 Da PI: 10.2386 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 21 | 9e-07 | 16 | 38 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cgk F r nL+ H r H 93509 16 FVCEICGKGFQRDQNLQLHRRGH 38 89*******************88 PP | |||||||
2 | zf-C2H2 | 15.9 | 3.7e-05 | 92 | 114 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k++ +s+ k H +t+ 93509 92 WKCDKCNKRYAVQSDWKAHSKTC 114 58*****************9998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 2.13E-8 | 15 | 38 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 2.7E-6 | 16 | 38 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
Pfam | PF12874 | 0.0075 | 16 | 38 | No hit | No description |
PROSITE profile | PS50157 | 11.614 | 16 | 38 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.012 | 16 | 38 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 18 | 38 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 240 | 57 | 87 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 1.9E-5 | 80 | 113 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 2.13E-8 | 87 | 112 | No hit | No description |
SMART | SM00355 | 110 | 92 | 112 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009937 | Biological Process | regulation of gibberellic acid mediated signaling pathway | ||||
GO:0010029 | Biological Process | regulation of seed germination | ||||
GO:0010431 | Biological Process | seed maturation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 146 aa Download sequence Send to blast |
EVIALSPKTL MATNRFVCEI CGKGFQRDQN LQLHRRGHNL PWKLRQRTSK EPRKRVYVCP 60 EASCVHHDPS RALGDLTGIK KHFCRKHGEK KWKCDKCNKR YAVQSDWKAH SKTCGTREYR 120 CDCGTLFSRY SLAIQSISFY FFLAF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_C | 5e-22 | 88 | 139 | 3 | 54 | Zinc finger protein JACKDAW |
5b3h_F | 5e-22 | 88 | 139 | 3 | 54 | Zinc finger protein JACKDAW |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor promoting the transition to germination by regulating light and hormonal signaling during seed maturation (PubMed:21571950). Acts as a positive regulator of phytochrome and/or gibberellin action (PubMed:21571950, PubMed:25035403). {ECO:0000269|PubMed:21571950, ECO:0000269|PubMed:25035403}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00592 | DAP | Transfer from AT5G66730 | Download |
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Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002970189.2 | 9e-96 | protein indeterminate-domain 2 | ||||
Refseq | XP_002978354.2 | 8e-96 | protein indeterminate-domain 2 | ||||
Swissprot | Q9LVQ7 | 2e-88 | IDD1_ARATH; Zinc finger protein ENHYDROUS | ||||
TrEMBL | D8RHP2 | 1e-105 | D8RHP2_SELML; Uncharacterized protein (Fragment) | ||||
STRING | EFJ28319 | 1e-106 | (Selaginella moellendorffii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP95 | 16 | 242 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G66730.1 | 9e-91 | C2H2-like zinc finger protein |
Link Out ? help Back to Top | |
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Phytozome | 93509 |
Entrez Gene | 9646439 |
Publications ? help Back to Top | |||
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