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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 93081 | ||||||||
Common Name | SELMODRAFT_93081 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
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Family | HSF | ||||||||
Protein Properties | Length: 178aa MW: 20503.1 Da PI: 9.5426 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 113.6 | 1.3e-35 | 27 | 118 | 2 | 102 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 Fl+k+y++++d++ + ++sw+ +gnsfvv+++ +f++++LpkyFkh+nf+SFvRQLn+YgF+kv+ ++ eF+++ F++g+++ll++i+ 93081 27 FLTKTYDMIDDPDSDAIVSWTGKGNSFVVWNPLDFSRDLLPKYFKHNNFSSFVRQLNTYGFRKVDPDR---------CEFANEGFRRGERHLLKNIH 114 9*****************************************************************99.........67****************** PP XXXX CS HSF_DNA-bind 99 rkks 102 rkk 93081 115 RKKP 118 **96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 1.0E-38 | 19 | 111 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 7.9E-59 | 23 | 116 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
SuperFamily | SSF46785 | 8.34E-35 | 23 | 116 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
PRINTS | PR00056 | 1.1E-20 | 27 | 50 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Pfam | PF00447 | 3.9E-31 | 27 | 116 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.1E-20 | 65 | 77 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 66 | 90 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.1E-20 | 78 | 90 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 178 aa Download sequence Send to blast |
MILPSQQQNG QQLQPDAALS SAAPPPFLTK TYDMIDDPDS DAIVSWTGKG NSFVVWNPLD 60 FSRDLLPKYF KHNNFSSFVR QLNTYGFRKV DPDRCEFANE GFRRGERHLL KNIHRKKPTS 120 QGHSQHQPGQ STEVGKLGLE GEVDRLNRDK NVLMLELVRL RQQQQQTERE LQVMGQRL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ldu_A | 7e-29 | 25 | 116 | 18 | 120 | Heat shock factor protein 1 |
5d5u_B | 8e-29 | 13 | 116 | 16 | 129 | Heat shock factor protein 1 |
5d5v_B | 8e-29 | 13 | 116 | 16 | 129 | Heat shock factor protein 1 |
5d5v_D | 8e-29 | 13 | 116 | 16 | 129 | Heat shock factor protein 1 |
5hdg_A | 7e-29 | 25 | 116 | 8 | 110 | Heat shock factor protein 1 |
5hdn_A | 7e-29 | 25 | 116 | 8 | 110 | Heat shock factor protein 1 |
5hdn_B | 7e-29 | 25 | 116 | 8 | 110 | Heat shock factor protein 1 |
5hdn_C | 7e-29 | 25 | 116 | 8 | 110 | Heat shock factor protein 1 |
5hdn_D | 7e-29 | 25 | 116 | 8 | 110 | Heat shock factor protein 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE). |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002970172.2 | 1e-128 | heat stress transcription factor A-1 | ||||
Swissprot | Q9LQM7 | 1e-77 | HFA1D_ARATH; Heat stress transcription factor A-1d | ||||
TrEMBL | D8RHL1 | 1e-129 | D8RHL1_SELML; Uncharacterized protein (Fragment) | ||||
STRING | EFJ28302 | 1e-130 | (Selaginella moellendorffii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP96 | 17 | 233 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G17750.1 | 2e-53 | heat shock factor 1 |
Link Out ? help Back to Top | |
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Phytozome | 93081 |
Entrez Gene | 9631986 |
Publications ? help Back to Top | |||
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