PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 92928
Common NameMICPUN_77618
Organism
Micromonas sp. RCC299
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas
Family MYB
Protein Properties Length: 695aa    MW: 78847.2 Da    PI: 9.1492
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
92928genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding43.76.5e-14853248
                     SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     g W   Ede+l+ av ++G+++W++I++ +  ++++kqck rw+ +l
            92928  8 GVWKNTEDEILKAAVMKYGKNQWARISSLLV-RKSAKQCKARWYEWL 53
                     78*****************************.************986 PP
2Myb_DNA-binding29.91.3e-0960103248
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                        WT +Ede+l+++ k++++  W+t+a  +g  Rt+ qc +r+ k+l
            92928  60 TEWTRQEDEKLLHLAKLMPTQ-WRTVAPIVG--RTPAQCLERYEKLL 103
                      68*****************99.********8..**********9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129421.567157IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.5E-18556IPR009057Homeodomain-like
SMARTSM007177.0E-15655IPR001005SANT/Myb domain
CDDcd001673.58E-121053No hitNo description
PfamPF139218.6E-131070No hitNo description
SuperFamilySSF466896.11E-2033108IPR009057Homeodomain-like
CDDcd116597.95E-3155106No hitNo description
Gene3DG3DSA:1.10.10.602.9E-1357104IPR009057Homeodomain-like
PROSITE profilePS5129415.20958107IPR017930Myb domain
SMARTSM007173.7E-1158105IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009870Biological Processdefense response signaling pathway, resistance gene-dependent
GO:0010204Biological Processdefense response signaling pathway, resistance gene-independent
GO:0042742Biological Processdefense response to bacterium
GO:0050832Biological Processdefense response to fungus
GO:0009507Cellular Componentchloroplast
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 695 aa     Download sequence    Send to blast
MRILIKGGVW KNTEDEILKA AVMKYGKNQW ARISSLLVRK SAKQCKARWY EWLDPSIKKT  60
EWTRQEDEKL LHLAKLMPTQ WRTVAPIVGR TPAQCLERYE KLLDAACQQD SNDALDDPRR  120
LKPGEIDPNP ESKPARPDPV DMDEEEKEML SEARARLANT KGKKAKRKAR EKQLEEARRL  180
ASLQKRRELK AAGIDTVKRA KRLKGIDYNA EIPFERKPAP GFFDGSLERR ALTLLSEETF  240
EPKGLADFEG GRQHDIEENL RKQDVKRQRI VQRHGVPHVM QTVDNNDPGN HRLHSELNLP  300
PPRVRESELD HAIRANGVLA HHERSSAHTV YQTLPDDKRF GNLARIGMPS GPDGISVSSR  360
SSPAQSIIGN EHLSSQFSQQ NDDVWVGHDV VTAAGAVKCA MASLPVPNNE YQIVLPTPKP  420
EQNNADHLRD FDRMNANLNS SSSPIERATH LKSKLRCLAR PSSFCIDSRT DTLRCSAEQI  480
ISRELGQMLE HHSLEHALHD TARLLTSPIS LKQLALSAAL ITREINALRC TSDQLVNSDE  540
IIYASNYAHN DCIMDKSTSH VILSKIYGSY DTNTTPPSGE HARACTSMMR DARRAGKIGH  600
RIEIVTSGLQ QRSAELHRRL SHIYAELVSM DHQYCSYNTL LYREQETYVQ RVRSQKNMIT  660
LASEKERQHQ FLHTQRASLL RTSEPQVEIC ENKR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5mqf_L1e-12223153313Cell division cycle 5-like protein
5xjc_L1e-12223153313Cell division cycle 5-like protein
5yzg_L1e-12223153313Cell division cycle 5-like protein
5z56_L1e-12223153313Cell division cycle 5-like protein
5z57_L1e-12223153313Cell division cycle 5-like protein
5z58_L1e-12223153313Cell division cycle 5-like protein
6ff4_L1e-12223153313Cell division cycle 5-like protein
6ff7_L1e-12223153313Cell division cycle 5-like protein
6icz_L1e-12223153313Cell division cycle 5-like protein
6id0_L1e-12223153313Cell division cycle 5-like protein
6id1_L1e-12223153313Cell division cycle 5-like protein
6qdv_O1e-12223153313Cell division cycle 5-like protein
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00028SELEXTransfer from AT1G09770Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0015740.0CP001574.1 Micromonas sp. RCC299 chromosome 1, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002507153.10.0predicted protein
TrEMBLC1FDL90.0C1FDL9_MICCC; Uncharacterized protein
STRINGXP_002507153.10.0(Micromonas sp. RCC299)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP10401617
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09770.11e-140cell division cycle 5
Publications ? help Back to Top
  1. Worden AZ, et al.
    Green evolution and dynamic adaptations revealed by genomes of the marine picoeukaryotes Micromonas.
    Science, 2009. 324(5924): p. 268-72
    [PMID:19359590]