PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 92634
Common NameSELMODRAFT_92634
Organism
Selaginella moellendorffii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
Family HSF
Protein Properties Length: 320aa    MW: 35206.5 Da    PI: 7.3118
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
92634genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind111.17.6e-35251162102
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl+k+y++++d++ ++++sw e+g++fvv+ + efa+++Lp+yFkh+nf+SFvRQLn+YgF+kv  ++         weF+++ F+kg+++ll++i+
         92634  25 FLTKTYQLVDDAASNDIVSWGEDGSTFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFRKVVPDR---------WEFANDFFRKGERHLLCEIH 112
                   9*****************************************************************99.........******************** PP

                   XXXX CS
  HSF_DNA-bind  99 rkks 102
                   r+k 
         92634 113 RRKA 116
                   **97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.104.5E-3716109IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004156.9E-5921114IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467855.3E-3322114IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000561.2E-192548IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004473.9E-3125114IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.2E-196375IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406488IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.2E-197688IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008356Biological Processasymmetric cell division
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042802Molecular Functionidentical protein binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    Send to blast
MALSFDSSDG CVLSVDSHRV VPAPFLTKTY QLVDDAASND IVSWGEDGST FVVWRPPEFA  60
RDLLPNYFKH NNFSSFVRQL NTYGFRKVVP DRWEFANDFF RKGERHLLCE IHRRKAQCSL  120
AHLQHYGSLS PSTSGDDPQQ LACNSSAAAA AAAAAAWSSS PLHSPRGICS ASSTAAVVTA  180
TSLSLSDENE RLRRDNCILL SELARLQKLY DDALLFLQHN MRPAAKFSPS SPGRASVDDQ  240
QRDVEDDHTS PGGMIKSAGP KLFGVVLHGR KRLHPDQQAD NQDAAVIKAA KIELELMPST  300
RSEAPWLKLR ASRDDRVCI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1hks_A4e-22211144106HEAT-SHOCK TRANSCRIPTION FACTOR
1hkt_A4e-22211144106HEAT-SHOCK TRANSCRIPTION FACTOR
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00187DAPTransfer from AT1G46264Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024530340.11e-150heat stress transcription factor B-4
SwissprotQ9C6353e-77HSFB4_ARATH; Heat stress transcription factor B-4
TrEMBLD8RFD10.0D8RFD1_SELML; Uncharacterized protein
STRINGEFJ288500.0(Selaginella moellendorffii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP9617233
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46264.14e-71heat shock transcription factor B4
Publications ? help Back to Top
  1. Banks JA, et al.
    The Selaginella genome identifies genetic changes associated with the evolution of vascular plants.
    Science, 2011. 332(6032): p. 960-3
    [PMID:21551031]