PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 92497 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus
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Family | C3H | ||||||||
Protein Properties | Length: 213aa MW: 22295.8 Da PI: 4.1805 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 25.3 | 2.7e-08 | 17 | 37 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 C+f+++ G C+ G++C+F+H+ 92497 17 ACKFYLA-GACRNGASCRFSHD 37 5******.*************6 PP | |||||||
2 | zf-CCCH | 27.3 | 6.2e-09 | 53 | 76 | 3 | 26 |
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 +e+C+f + G C +GdrCk+aHg 92497 53 RERCKFVDAPGGCTFGDRCKYAHG 76 89*********************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 15.234 | 12 | 39 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.6E-4 | 13 | 38 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 6.93E-7 | 14 | 37 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 5.6E-6 | 17 | 37 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 4.2E-5 | 18 | 38 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.197 | 50 | 78 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.01 | 51 | 77 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 6.41E-6 | 53 | 79 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 7.9E-7 | 53 | 76 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 5.8E-7 | 55 | 79 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 213 aa Download sequence Send to blast |
VFDVTARVTS RAMSATACKF YLAGACRNGA SCRFSHDADA SASASARAST ETRERCKFVD 60 APGGCTFGDR CKYAHGASDA GASDVARAFS RVTLATGAGR GMSASATAFA PGGTRGNANA 120 NGAEYEHGEE EDEDWGYVDE HGNWVSFDDE GEGAREFLAA QLPDEDELLG LTSEGPSGAG 180 DDAWGFFDEG GNWVSLEGEG QRYLQTQEDL VR* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP000583 | 0.0 | CP000583.1 Ostreococcus lucimarinus CCE9901 chromosome 3, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_001416752.1 | 1e-152 | predicted protein, partial | ||||
TrEMBL | A4RUZ0 | 1e-150 | A4RUZ0_OSTLU; Uncharacterized protein (Fragment) | ||||
STRING | ABO95045 | 1e-151 | (Ostreococcus 'lucimarinus') |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP1918 | 12 | 12 |
Link Out ? help Back to Top | |
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Phytozome | 92497 |