PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 920531 | ||||||||
Common Name | ARALYDRAFT_920531 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | bZIP | ||||||||
Protein Properties | Length: 195aa MW: 22410.5 Da PI: 9.6346 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 24.6 | 5.5e-08 | 84 | 141 | 5 | 62 |
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklkse 62 +r +rk +NR +A+rsR +K++ +e + + +L+ eN++L ++l + ++++ ++e 920531 84 RRKKRKLSNRKSAQRSRIKKQKHLEDVRIELNKLKIENRELENRLRHVLYHCQREQME 141 799****************************************999998888876665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.20.5.170 | 2.0E-7 | 78 | 131 | No hit | No description |
SMART | SM00338 | 2.4E-6 | 80 | 144 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF07716 | 8.7E-6 | 82 | 129 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 9.967 | 82 | 131 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 2.03E-7 | 84 | 132 | No hit | No description |
CDD | cd14702 | 2.95E-13 | 85 | 136 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 87 | 102 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 195 aa Download sequence Send to blast |
MSTFSPVFSS EPVFANHVPA LETGFTPWDA SDLFSIFNSP VSPMEMNPGL EKTNPSQIQN 60 QSYSNPGLKD KPLDCTGSND VDERRKKRKL SNRKSAQRSR IKKQKHLEDV RIELNKLKIE 120 NRELENRLRH VLYHCQREQM ENDSLRLEHR VLHEKLLNLR QALVMRQIQQ SSTCATWSCI 180 NSTVVTVLQN PSII* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 82 | 89 | ERRKKRKL |
2 | 83 | 104 | RRKKRKLSNRKSAQRSRIKKQK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 920531 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002862568.1 | 1e-143 | basic leucine zipper 4 | ||||
TrEMBL | D7MXA7 | 1e-142 | D7MXA7_ARALL; Uncharacterized protein | ||||
STRING | scaffold_33400002.1 | 1e-142 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3338 | 26 | 65 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G49760.1 | 1e-48 | basic leucine-zipper 5 |
Link Out ? help Back to Top | |
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Phytozome | 920531 |
Entrez Gene | 9298643 |