PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 920430 | ||||||||
Common Name | ARALYDRAFT_920430 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | bZIP | ||||||||
Protein Properties | Length: 179aa MW: 21548.3 Da PI: 11.4359 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 35.6 | 2e-11 | 66 | 118 | 3 | 55 |
XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkke 55 +lk+ r ++NRe ArrsR RKk++ieeL++ vk+L N+ L +++ + + 920430 66 SLKKSSRNISNREYARRSRMRKKKQIEELQQQVKQLMMLNHHLHEKVINFLES 118 689****************************************9998665555 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.20.5.170 | 4.0E-9 | 66 | 116 | No hit | No description |
SMART | SM00338 | 2.6E-6 | 66 | 128 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 2.9E-10 | 66 | 126 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 9.473 | 66 | 129 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 5.13E-9 | 67 | 122 | No hit | No description |
CDD | cd14702 | 2.43E-8 | 72 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 179 aa Download sequence Send to blast |
MHCGGSRNEA SGSAYQRAHE HKERREYRNL WRRRGRSGGN EFRDDWNLMR RWLLHLRRPN 60 RRRYYSLKKS SRNISNREYA RRSRMRKKKQ IEELQQQVKQ LMMLNHHLHE KVINFLESNH 120 QILHENSQLK EKASSFHLLM ADVLLPMRIA ESNINDRNVN YLRGETSNRP TNSPFDNG* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 920430 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB015472 | 1e-130 | AB015472.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MAE1. | |||
GenBank | CP002688 | 1e-130 | CP002688.1 Arabidopsis thaliana chromosome 5 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020889024.1 | 3e-62 | basic leucine zipper 43 | ||||
TrEMBL | D7MX25 | 1e-127 | D7MX25_ARALL; Uncharacterized protein | ||||
STRING | scaffold_26900003.1 | 1e-127 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6185 | 25 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60830.1 | 3e-61 | basic leucine-zipper 70 |
Link Out ? help Back to Top | |
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Phytozome | 920430 |
Entrez Gene | 9298721 |