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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
920093 |
Common Name | ARALYDRAFT_920093 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family |
SRS |
Protein Properties |
Length: 335aa MW: 36070.6 Da PI: 7.4581 |
Description |
SRS family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
920093 | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | DUF702 | 232.3 | 8e-72 | 117 | 266 | 4 | 154 |
DUF702 4 gtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstklssaeskkeletsslP 106
g+ sCqdCGnq+kkdCah+RCRtCCksrg++C thvkstWvpaakrrerqqqla+ ++ +++ + e+ +kr+re+ ++++++l +t++++++++ le+ ++P
920093 117 GGPSCQDCGNQSKKDCAHMRCRTCCKSRGLECPTHVKSTWVPAAKRRERQQQLASGQQPQSQPQGESVPKRQREHIQATTTSLVCTRIPTNNTS-VLEVGNFP 218
6789*************************************************************************************99866.899999** PP
DUF702 107 eevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154
+ev+s+avfrcvrvssvdd+eee+aY+tavsigGhvf+GiLydqG++e
920093 219 PEVRSPAVFRCVRVSSVDDEEEEYAYKTAVSIGGHVFRGILYDQGPAE 266
*********************************************986 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0009938 | Biological Process | negative regulation of gibberellic acid mediated signaling pathway |
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
Protein Sequence Length: 335 aa
Download sequence Send
to blast |
MAGFFSLEQG GGRNSQDEHN HHRTNTTNPS SSGTESWLWC RNPNSNADGG EVAPSYKGTL 60 ELWQHPNNQE IIFQQQQQER LDLYTSAAGL GVGPSNRSLI ETSGGALMMM RSSSGGGGPS 120 CQDCGNQSKK DCAHMRCRTC CKSRGLECPT HVKSTWVPAA KRRERQQQLA SGQQPQSQPQ 180 GESVPKRQRE HIQATTTSLV CTRIPTNNTS VLEVGNFPPE VRSPAVFRCV RVSSVDDEEE 240 EYAYKTAVSI GGHVFRGILY DQGPAERSSS GGGSQPLNLI TAGPSASSSS PNVSCNNGVV 300 GSTSDHYIDP ASLNYPTPIN TFMTGTHFFS NSRS*
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Functional Description ? help
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Source |
Description |
UniProt | Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). Suppressor of the gibberellin (GA) signal transduction. {ECO:0000269|PubMed:10368174, ECO:0000269|PubMed:11706176, ECO:0000269|PubMed:16740146}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AF152555 | 0.0 | AF152555.1 Arabidopsis thaliana putative zinc finger protein SHI (SHI) mRNA, complete cds. |
Best hit in Arabidopsis thaliana ? help
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Hit ID |
E-value |
Description |
AT5G66350.1 | 1e-155 | Lateral root primordium (LRP) protein-related |
Publications
? help Back to Top |
- Islam MA, et al.
Overexpression of the AtSHI gene in poinsettia, Euphorbia pulcherrima, results in compact plants. PLoS ONE, 2013. 8(1): p. e53377 [PMID:23308204] - Pfannebecker KC,Lange M,Rupp O,Becker A
An Evolutionary Framework for Carpel Developmental Control Genes. Mol. Biol. Evol., 2017. 34(2): p. 330-348 [PMID:28049761] - Estornell LH,Landberg K,Cierlik I,Sundberg E
SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis. Front Plant Sci, 2018. 9: p. 150 [PMID:29491878]
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