PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 920093
Common NameARALYDRAFT_920093
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family SRS
Protein Properties Length: 335aa    MW: 36070.6 Da    PI: 7.4581
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
920093genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702232.38e-721172664154
  DUF702   4 gtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstklssaeskkeletsslP 106
             g+ sCqdCGnq+kkdCah+RCRtCCksrg++C thvkstWvpaakrrerqqqla+ ++ +++ + e+ +kr+re+ ++++++l +t++++++++  le+ ++P
  920093 117 GGPSCQDCGNQSKKDCAHMRCRTCCKSRGLECPTHVKSTWVPAAKRRERQQQLASGQQPQSQPQGESVPKRQREHIQATTTSLVCTRIPTNNTS-VLEVGNFP 218
             6789*************************************************************************************99866.899999** PP

  DUF702 107 eevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154
             +ev+s+avfrcvrvssvdd+eee+aY+tavsigGhvf+GiLydqG++e
  920093 219 PEVRSPAVFRCVRVSSVDDEEEEYAYKTAVSIGGHVFRGILYDQGPAE 266
             *********************************************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051425.4E-65118265IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016232.7E-26120162IPR006510Zinc finger, lateral root primordium type 1
TIGRFAMsTIGR016242.8E-26217264IPR006511Lateral Root Primordium type 1, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009938Biological Processnegative regulation of gibberellic acid mediated signaling pathway
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MAGFFSLEQG GGRNSQDEHN HHRTNTTNPS SSGTESWLWC RNPNSNADGG EVAPSYKGTL  60
ELWQHPNNQE IIFQQQQQER LDLYTSAAGL GVGPSNRSLI ETSGGALMMM RSSSGGGGPS  120
CQDCGNQSKK DCAHMRCRTC CKSRGLECPT HVKSTWVPAA KRRERQQQLA SGQQPQSQPQ  180
GESVPKRQRE HIQATTTSLV CTRIPTNNTS VLEVGNFPPE VRSPAVFRCV RVSSVDDEEE  240
EYAYKTAVSI GGHVFRGILY DQGPAERSSS GGGSQPLNLI TAGPSASSSS PNVSCNNGVV  300
GSTSDHYIDP ASLNYPTPIN TFMTGTHFFS NSRS*
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). Suppressor of the gibberellin (GA) signal transduction. {ECO:0000269|PubMed:10368174, ECO:0000269|PubMed:11706176, ECO:0000269|PubMed:16740146}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap920093
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF1525550.0AF152555.1 Arabidopsis thaliana putative zinc finger protein SHI (SHI) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002865074.20.0protein SHORT INTERNODES
SwissprotQ9XGX00.0SHI_ARATH; Protein SHORT INTERNODES
TrEMBLD7MMY60.0D7MMY6_ARALL; Uncharacterized protein
STRINGscaffold_803493.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM34192864
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66350.11e-155Lateral root primordium (LRP) protein-related
Publications ? help Back to Top
  1. Islam MA, et al.
    Overexpression of the AtSHI gene in poinsettia, Euphorbia pulcherrima, results in compact plants.
    PLoS ONE, 2013. 8(1): p. e53377
    [PMID:23308204]
  2. Pfannebecker KC,Lange M,Rupp O,Becker A
    An Evolutionary Framework for Carpel Developmental Control Genes.
    Mol. Biol. Evol., 2017. 34(2): p. 330-348
    [PMID:28049761]
  3. Estornell LH,Landberg K,Cierlik I,Sundberg E
    SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis.
    Front Plant Sci, 2018. 9: p. 150
    [PMID:29491878]