PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

ZF-HD

Protein Properties

Length: 279aa MW: 30979.4 Da PI: 6.2984

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
919872	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	100.9	9.1e-32	70	123	3	57
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrev 57 ++r++eClkN+A+++GghavDGCgEfmp+ g egt++alkCaACgCHRnFHR+e 919872 70 RFRFRECLKNQAVNIGGHAVDGCGEFMPA-GIEGTIDALKCAACGCHRNFHRKEL 123 789***********************9.999******************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04770	2.3E-28	71	122	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDom	PD125774	1.0E-24	72	123	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMs	TIGR01566	6.1E-29	72	122	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	25.415	73	122	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE pattern	PS00028	0	109	133	IPR007087	Zinc finger, C2H2
Gene3D	G3DSA:1.10.10.60	3.8E-30	181	251	IPR009057	Homeodomain-like
SuperFamily	SSF46689	2.93E-18	183	251	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01565	1.2E-25	190	246	IPR006455	Homeodomain, ZF-HD class

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010371	Biological Process	regulation of gibberellin biosynthetic process
GO:0010431	Biological Process	seed maturation
GO:0003677	Molecular Function	DNA binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 279 aa Download sequence Send to blast
MEFEDNNNDE EQEEDMNLHE EEEDDDAVYE SPPLSRVVPK ASTESHETTG TTSTGGGGGF 60 MVVHGGGGSR FRFRECLKNQ AVNIGGHAVD GCGEFMPAGI EGTIDALKCA ACGCHRNFHR 120 KELPYFHHAP PQHQPPPPPP GFYRLPAPVS YRPPPSQAPP LQLALPPPQR ERSEDPMETS 180 SAEAGGGGIR KRYRTKFTAE QKERMLALAE RIGWRIQRQD DEVIQRFCQE TGVPRQVLKV 240 WLHNNKHTLG KSPSPLHHHQ PPPPPPPQSS FHHEQDQP*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wh5_A	4e-36	189	248	16	75	ZF-HD homeobox family protein
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00588	DAP	Transfer from AT5G65410	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	919872

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB011479	0.0	AB011479.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MNA5.
GenBank	BT002385	0.0	BT002385.1 Arabidopsis thaliana putative protein (At5g65410) mRNA, complete cds.
GenBank	BT006304	0.0	BT006304.1 Arabidopsis thaliana At5g65410 mRNA, complete cds.
GenBank	CP002688	0.0	CP002688.1 Arabidopsis thaliana chromosome 5 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002864955.1	0.0	zinc-finger homeodomain protein 1
Swissprot	Q9FKP8	1e-151	ZHD1_ARATH; Zinc-finger homeodomain protein 1
TrEMBL	D7MTX9	0.0	D7MTX9_ARALL; Uncharacterized protein
STRING	scaffold_803272.1	0.0	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM13237	17	28

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G65410.1	2e-99	homeobox protein 25

Link Out ? help Back to Top
Phytozome	919872
Entrez Gene	9301030

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Bueso E,Serrano R,Pallás V,Sánchez-Navarro JA Seed tolerance to deterioration in arabidopsis is affected by virus infection. Plant Physiol. Biochem., 2017. 116: p. 1-8 [PMID:28477474]