PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 919730
Common NameARALYDRAFT_919730
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family CAMTA
Protein Properties Length: 1063aa    MW: 118707 Da    PI: 6.44
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
919730genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1188.37.8e-59191362118
    CG-1   2 lke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqrrcywlLe 103
             l+e ++rwl++ ei++iL n++k+++++e+++rp+sgsl+L++rk++ryfrkDG++w+kkkdgktv+E+hekLKvg+++vl+cyYah+e+n++fqrrcyw+Le
  919730  19 LSEaQHRWLRPAEICEILRNHQKFHIASEPPNRPPSGSLFLFDRKVLRYFRKDGHNWRKKKDGKTVKEAHEKLKVGSIDVLHCYYAHGEDNENFQRRCYWMLE 121
             45559************************************************************************************************** PP

    CG-1 104 eelekivlvhylevk 118
             ++l +iv+vhylevk
  919730 122 QDLMHIVFVHYLEVK 136
             ************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143786.27515141IPR005559CG-1 DNA-binding domain
SMARTSM010763.6E-8718136IPR005559CG-1 DNA-binding domain
PfamPF038598.5E-5221135IPR005559CG-1 DNA-binding domain
SuperFamilySSF812966.79E-13475559IPR014756Immunoglobulin E-set
SuperFamilySSF484032.18E-19655767IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029720.022656767IPR020683Ankyrin repeat-containing domain
PfamPF127964.6E-8657733IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.201.1E-18657768IPR020683Ankyrin repeat-containing domain
CDDcd002042.25E-15662765No hitNo description
PROSITE profilePS500889.458673705IPR002110Ankyrin repeat
SMARTSM002481000673702IPR002110Ankyrin repeat
PROSITE profilePS5008810.873706738IPR002110Ankyrin repeat
SMARTSM002480.0029706735IPR002110Ankyrin repeat
SMARTSM000150.32881903IPR000048IQ motif, EF-hand binding site
SuperFamilySSF525401.22E-7882931IPR027417P-loop containing nucleoside triphosphate hydrolase
PROSITE profilePS500967.858883911IPR000048IQ motif, EF-hand binding site
PfamPF006120.0021883902IPR000048IQ motif, EF-hand binding site
SMARTSM000150.0092904926IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500969.304905929IPR000048IQ motif, EF-hand binding site
PfamPF006124.7E-4907926IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0071275Biological Processcellular response to aluminum ion
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1063 aa     Download sequence    Send to blast
MADRGSFGFA PRLDIKQLLS EAQHRWLRPA EICEILRNHQ KFHIASEPPN RPPSGSLFLF  60
DRKVLRYFRK DGHNWRKKKD GKTVKEAHEK LKVGSIDVLH CYYAHGEDNE NFQRRCYWML  120
EQDLMHIVFV HYLEVKGNRM STSGTKENHS NSLSGTGSVN VDSTATRSSI LSPLCEDADS  180
GDSRQASSSL QQNPEPQTVV PQIMHHLNAN TMNSYNTTSV LGNRDGWTSA PGIGIVSQVH  240
GNRVKESDSQ RSGDVPAWDA SFENSLARYQ NLPYNAPLTQ TQPSNFGLIP MEGKTEKGSL  300
LTAEHLRDPL RNQVNWQLIY IPVQESVPLQ KWPMDSHSGM TDATDLALFG QGAHENFGTF  360
SSLLGSQNQQ PSSFQAPFTN NEAAYIPKLG PEDLIYEASA NQTLPLRKAL LKKEDSLKKV  420
DSFSRWVSKE LGEMEDLQMQ SSSGGIAWTS VECENAAAGS SLSPSLSEDQ RFTMIDFWPK  480
WTQTDSEVEV MVIGTFLLSP QEVTSYSWSC MFGEVEVPAD ILVDGVLCCH APPHEVGRVP  540
FYITCSDRFS CSEVREFDFL PGSTRKLNAT DIYGANTIET SLHVRFENLL ALRSSVQEHH  600
IFENVGEKRR KISKIMLLKD EKESLLPGTI EKDLAELEAK DRLIREEFED KLYLWLIHKV  660
TEEGKGPNIL DEDGQGVLHL AAALGYDWAI KPILAAGVSI NFRDANGWSA LHWAAFSGRE  720
DTVAVLVSLG ADAGALADPS PEHPLGKTAA DLAYGNGHRG ISGFLAESSL TSYLEKLTVD  780
AKENSSADSS GAKAVLTVAE RTATPMSYGD VPETLSMKDS LTAVFNATQA ADRLHQVFRM  840
QSFQRKQLSE LGGDKKFDIS DELAVSFAAA KTKKPGHSNG AVHAAAVQIQ KKYRGWKKRK  900
EFLLIRQRIV KIQAHVRGHQ VRKQYRAIIW SVGLLEKIIL RWRRKGSGLR GFKRDTITKP  960
TEPVCPAPQE DDYDFLKEGR KQTEERLKKA LTRVKSMAQY PEARAQYRRL LTVVEGFREN  1020
EASSSSALKN NTEEAANYNE EDDLIDIDSL LDDDTFMSIA FE*
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved in freezing tolerance in association with CAMTA1 and CAMTA3. Contributes together with CAMTA1 and CAMTA3 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:23581962). Involved together with CAMTA3 and CAMTA4 in the positive regulation of a general stress response (PubMed:25039701). Involved in tolerance to aluminum. Binds to the promoter of ALMT1 transporter and contributes to the positive regulation of aluminum-induced expression of ALMT1 (PubMed:25627216). {ECO:0000250|UniProtKB:Q8GSA7, ECO:0000269|PubMed:23581962, ECO:0000269|PubMed:25039701, ECO:0000269|PubMed:25627216, ECO:0000305|PubMed:11925432}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00043PBMTransfer from AT5G64220Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap919730
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salt, wounding, abscisic acid, H(2)O(2) and salicylic acid (PubMed:12218065). Induced by aluminum (PubMed:25627216). {ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:25627216}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2294030.0AK229403.1 Arabidopsis thaliana mRNA for Calmodulin-binding transcription activator 2, complete cds, clone: RAFL16-66-C08.
GenBankBT0108740.0BT010874.1 Arabidopsis thaliana At5g64220 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020883660.10.0calmodulin-binding transcription activator 2 isoform X1
SwissprotQ6NPP40.0CMTA2_ARATH; Calmodulin-binding transcription activator 2
TrEMBLD7MR880.0D7MR88_ARALL; Calmodulin-binding protein
STRINGscaffold_803130.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40822452
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64220.20.0Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains
Publications ? help Back to Top
  1. Benn G, et al.
    A key general stress response motif is regulated non-uniformly by CAMTA transcription factors.
    Plant J., 2014. 80(1): p. 82-92
    [PMID:25039701]
  2. Kidokoro S, et al.
    Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature.
    Plant Cell, 2017. 29(4): p. 760-774
    [PMID:28351986]