PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 919451 | ||||||||
Common Name | ARALYDRAFT_919451 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | HSF | ||||||||
Protein Properties | Length: 300aa MW: 33797.5 Da PI: 6.9288 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 117.9 | 6e-37 | 24 | 115 | 2 | 102 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 Fl+k+y+++ed++++++isw+e+g+sf+v+++++fak++Lpk+Fkh+nf+SFvRQLn+YgFkkv ++ weF+++ Fk+g+k+ll++i+ 919451 24 FLTKTYNLVEDSSIDDVISWNEDGSSFIVWNPTDFAKDLLPKHFKHNNFSSFVRQLNTYGFKKVVPDR---------WEFSNDFFKRGEKRLLREIQ 111 9*****************************************************************99.........******************** PP XXXX CS HSF_DNA-bind 99 rkks 102 r+k 919451 112 RRKI 115 *985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00415 | 8.7E-56 | 20 | 113 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
SuperFamily | SSF46785 | 4.44E-35 | 21 | 113 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Gene3D | G3DSA:1.10.10.10 | 4.5E-38 | 21 | 113 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF00447 | 3.4E-32 | 24 | 113 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 2.2E-19 | 24 | 47 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 2.2E-19 | 62 | 74 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 63 | 87 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 2.2E-19 | 75 | 87 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 300 aa Download sequence Send to blast |
MTSPPVDAMI TGESSSQRSI PTPFLTKTYN LVEDSSIDDV ISWNEDGSSF IVWNPTDFAK 60 DLLPKHFKHN NFSSFVRQLN TYGFKKVVPD RWEFSNDFFK RGEKRLLREI QRRKITTTHQ 120 TVVAPSSEQR AQTMVVSPSN SGEDTNNNNN MNNQVMSSPS SWYCQTSGNG GLSVELLEEN 180 EKLRSQNIQL NRELTQMKSI CDNIFSLMSN YVGSQTTDRS YSPGGSSSQP VEFLPAKRFS 240 ETEVEEEASP RLFGVPIGLK RTRSEGVQVK RVSTAAVVGE NSDEWLTRHC NRTNQRVCN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5d5u_B | 2e-23 | 6 | 113 | 12 | 129 | Heat shock factor protein 1 |
5d5v_B | 2e-23 | 6 | 113 | 12 | 129 | Heat shock factor protein 1 |
5d5v_D | 2e-23 | 6 | 113 | 12 | 129 | Heat shock factor protein 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE). |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00575 | DAP | Transfer from AT5G62020 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 919451 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB493808 | 0.0 | AB493808.1 Arabidopsis thaliana At5g62020 mRNA for hypothetical protein, partial cds, clone: RAAt5g62020. | |||
GenBank | AJ251867 | 0.0 | AJ251867.1 Arabidopsis thaliana mRNA for heat shock factor 6 (hsf6 gene). | |||
GenBank | AK229690 | 0.0 | AK229690.1 Arabidopsis thaliana mRNA for heat shock factor 6, complete cds, clone: RAFL21-11-D17. | |||
GenBank | BT008542 | 0.0 | BT008542.1 Arabidopsis thaliana clone U51273 putative heat shock factor 6 (At5g62020) mRNA, complete cds. | |||
GenBank | BT008658 | 0.0 | BT008658.1 Arabidopsis thaliana clone RAFL21-11-D17 (R51273) putative heat shock factor 6 (At5g62020) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002864765.1 | 0.0 | heat stress transcription factor B-2a | ||||
Swissprot | Q9SCW4 | 0.0 | HFB2A_ARATH; Heat stress transcription factor B-2a | ||||
TrEMBL | D7MKQ1 | 0.0 | D7MKQ1_ARALL; Uncharacterized protein | ||||
STRING | scaffold_802851.1 | 0.0 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM965 | 28 | 111 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G62020.1 | 1e-179 | heat shock transcription factor B2A |
Link Out ? help Back to Top | |
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Phytozome | 919451 |
Entrez Gene | 9300841 |
Publications ? help Back to Top | |||
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