PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 919257 | ||||||||
Common Name | ARALYDRAFT_919257 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | B3 | ||||||||
Protein Properties | Length: 222aa MW: 25707.2 Da PI: 10.297 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 40.1 | 6.8e-13 | 14 | 104 | 1 | 94 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 ffkv + + l lp +f + ++k +k +++++ g+ W++ l+ +++ +r+++ +GWk+ vk +Lk g+f+ F++dg+ +f++++ 919257 14 FFKVY--LPDESGDDLELPISFNSF--LPKSLPKNVIVRSIYGNIWKMALKKcCGHVERFTMVNGWKKIVKNEDLKGGEFLEFEFDGSWCFNFCI 104 66777..445555669999999743..56779999***************444666666**************************9988886555 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 7.46E-18 | 11 | 107 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 11.011 | 12 | 108 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 2.8E-14 | 12 | 106 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 7.18E-12 | 12 | 105 | No hit | No description |
Pfam | PF02362 | 7.5E-11 | 14 | 104 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 3.1E-11 | 14 | 108 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 1.67E-10 | 122 | 220 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.5E-5 | 125 | 220 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 0.075 | 127 | 218 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 222 aa Download sequence Send to blast |
MNRGNSGGNC LPKFFKVYLP DESGDDLELP ISFNSFLPKS LPKNVIVRSI YGNIWKMALK 60 KCCGHVERFT MVNGWKKIVK NEDLKGGEFL EFEFDGSWCF NFCIYGRATF KKLRSSVHYL 120 DNHMNPFFTV NQHRQIKYNL LRIPTKVITK SGLHFPEFIN LIDPLEKMFG KLKRKVEGQT 180 IKGFRSIIRR NNVKLTDKVI CELVKEMDGL VREIKVHVIR G* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 919257 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB026632 | 1e-102 | AB026632.1 Arabidopsis thaliana genomic DNA, chromosome 5, BAC clone:F15L12. | |||
GenBank | CP002688 | 1e-102 | CP002688.1 Arabidopsis thaliana chromosome 5 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020888769.1 | 5e-81 | B3 domain-containing protein At5g60142 isoform X2 | ||||
Swissprot | Q9LST3 | 8e-69 | Y5142_ARATH; B3 domain-containing protein At5g60142 | ||||
TrEMBL | D7MT70 | 1e-160 | D7MT70_ARALL; Uncharacterized protein | ||||
STRING | scaffold_802657.1 | 1e-161 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4947 | 18 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60142.1 | 3e-71 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | 919257 |
Entrez Gene | 9302447 |