PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 919255 | ||||||||
Common Name | ARALYDRAFT_919255 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | B3 | ||||||||
Protein Properties | Length: 244aa MW: 27855.1 Da PI: 8.3489 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 55.3 | 1.2e-17 | 14 | 103 | 1 | 95 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE...EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr...yvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 ffkv + + lvlp +f ++ ++k+ + t+t+++ g++W++ l rk++++ +v+ +GWk+Fvk+ +Lk gDf+ F++dg++ f ++ 919255 14 FFKVY--LPDESGDDLVLPISFN-SC-LPKPLPETVTVRSIYGKVWKLVL--RKCGSEvesFVMVNGWKSFVKDEDLKGGDFLEFEFDGSRLF--NFC 103 67777..44555667*******7.67.5677999****************..666666668*************************9986666..444 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 9.22E-21 | 11 | 106 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.8E-18 | 12 | 106 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 13.098 | 12 | 108 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 3.68E-17 | 12 | 105 | No hit | No description |
Pfam | PF02362 | 7.8E-16 | 14 | 104 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.4E-18 | 14 | 108 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 8.4E-8 | 139 | 230 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.16E-10 | 139 | 228 | IPR015300 | DNA-binding pseudobarrel domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 244 aa Download sequence Send to blast |
MNKGNFGDYC LPKFFKVYLP DESGDDLVLP ISFNSCLPKP LPETVTVRSI YGKVWKLVLR 60 KCGSEVESFV MVNGWKSFVK DEDLKGGDFL EFEFDGSRLF NFCIYEHGTL CKRIRRSSEQ 120 SEEIKMESDS DEKNQYLDDR ENPSFTLTLN PKKKSQLLIP ARVIKDYDLH FPESITLVDP 180 LVNKFGTLEK KIKIQTNGSV FVKGFGSIIR RNQVKTTDKM MCEIKKTGDN NLVQTIKIHI 240 ISG* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1yel_A | 2e-14 | 4 | 107 | 1 | 101 | At1g16640 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00569 | DAP | Transfer from AT5G60130 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 919255 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | DQ056730 | 1e-151 | DQ056730.1 Arabidopsis thaliana transcriptional factor B3 family protein (At5g60130) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001190577.1 | 1e-132 | AP2/B3-like transcriptional factor family protein | ||||
Swissprot | Q9LVG1 | 1e-67 | Y5013_ARATH; B3 domain-containing protein At5g60130 | ||||
TrEMBL | D7MT68 | 1e-177 | D7MT68_ARALL; Uncharacterized protein | ||||
STRING | scaffold_802655.1 | 1e-178 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4947 | 18 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60130.2 | 1e-135 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | 919255 |
Entrez Gene | 9300746 |
Publications ? help Back to Top | |||
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