PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 919155
Common NameARALYDRAFT_919155
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family NAC
Protein Properties Length: 283aa    MW: 32270.1 Da    PI: 6.0145
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
919155genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM37.38e-12411838127
     NAM  38 diykvePwdLpk..kvkaeekewyfFskrdkkya....tgkrknra........tksgyWkatgkdkevlskkgelvglkktLvfy...........kgrapk 115
             d+y  +Pw L++  +   +e+ewy+Fs+r + ++    +gk ++r+        +++g W+   k++ + + +g+ +g+kk L++            +g ++ 
  919155   4 DVYAKDPWLLDHpnNSLFKEDEWYYFSTRTQISEkkigRGKYPKRKitgdnddgIDRGNWRINRKENIIDEDTGAIIGIKKNLTYKgtntnkkqkrgDGASSP 106
             89********74224445889******997765533336777788566777776679******99999999999************98888776655578888 PP

     NAM 116 gektdWvmheyr 127
             g+++ W+m+e+ 
  919155 107 GSESGWIMDEFV 118
             99********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100521.9551140IPR003441NAC domain
SuperFamilySSF1019411.44E-174140IPR003441NAC domain
PfamPF023651.4E-615118IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    Send to blast
MMKDVYAKDP WLLDHPNNSL FKEDEWYYFS TRTQISEKKI GRGKYPKRKI TGDNDDGIDR  60
GNWRINRKEN IIDEDTGAII GIKKNLTYKG TNTNKKQKRG DGASSPGSES GWIMDEFVIL  120
LPEPDDDKFQ ELVLCKIHKK KKKDKKDHQH ESPSSSSEQQ PIKKRKSKKS KKEHESVLAA  180
SSEQQQPLLC SGNESEIPKI ASSPCSAAET ERNGEQSGEG NMVNQTDVLA TEKNAMEMTR  240
EEEGDWIADM YDIFVNHQYR DMMINNADQP TISIPPVEYP WI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-12414653171NO APICAL MERISTEM PROTEIN
1ut4_B2e-12414653171NO APICAL MERISTEM PROTEIN
1ut7_A2e-12414653171NO APICAL MERISTEM PROTEIN
1ut7_B2e-12414653171NO APICAL MERISTEM PROTEIN
4dul_A2e-12414653171NAC domain-containing protein 19
4dul_B2e-12414653171NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap919155
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002866322.10.0NAC domain-containing protein 19
TrEMBLD7MRT20.0D7MRT2_ARALL; Uncharacterized protein
STRINGscaffold_802555.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM26071358
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52890.12e-12NAC domain containing protein 19