PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 919094
Common NameARALYDRAFT_919094
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family NAC
Protein Properties Length: 294aa    MW: 33936.8 Da    PI: 5.7097
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
919094genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM63.37.6e-20101553127
     NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvkaeekewyfFskrdkkya....tgkrknra......tksgyWkatgkdkevl 93 
              G++F+Pt ee++++yLk+k +g+++    +i   d+y  ePw L++  +   +e+ewy+Fs+r + ++    +gk ++r+      +++g W+   k+  + 
  919094  10 EGIHFDPTYEEVIHKYLKPKQRGEDCGD--FILMKDVYAKEPWLLDHpnNSFFKEDEWYYFSTRTQISEkkigRGKYPKRKidnndgIDRGNWRINAKEDIID 110
             599*********************9665..788899*********74224344889******9977655333366777776566666669****999988888 PP

     NAM  94 skkgelvglkktLvfy...........kgrapkgektdWvmheyr 127
             + +g  +g+kk L++            +g +  ++++ W+m+e+ 
  919094 111 KDTGDIIGIKKNLTYKgtntnkkqkrgDGASAPSSESGWIMDEFV 155
             889999**********888776655443444445699******97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100527.058177IPR003441NAC domain
PfamPF023651.8E-1410155IPR003441NAC domain
SuperFamilySSF1019412.22E-2410177IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
MTTEYYKEDE GIHFDPTYEE VIHKYLKPKQ RGEDCGDFIL MKDVYAKEPW LLDHPNNSFF  60
KEDEWYYFST RTQISEKKIG RGKYPKRKID NNDGIDRGNW RINAKEDIID KDTGDIIGIK  120
KNLTYKGTNT NKKQKRGDGA SAPSSESGWI MDEFVIVLPK PDEDKFQELV VCKIHKKKES  180
KKDHQHEASS SSEQQPIKKR KSKKEHESVL AASSEQQQPL LCGCNESEIP KIASSPCSAA  240
ETERNGEQSG EGNMVHQTEK NAMEMTREEE GDWIADNDIF VNRQYRDQPY SWI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-151118020168NO APICAL MERISTEM PROTEIN
1ut4_B2e-151118020168NO APICAL MERISTEM PROTEIN
1ut7_A2e-151118020168NO APICAL MERISTEM PROTEIN
1ut7_B2e-151118020168NO APICAL MERISTEM PROTEIN
4dul_A2e-151118020168NAC domain-containing protein 19
4dul_B2e-151118020168NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap919094
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002864594.10.0NAC domain-containing protein 19
TrEMBLD7MR370.0D7MR37_ARALL; Uncharacterized protein
STRINGscaffold_802494.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM26071358
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18300.19e-11NAC domain containing protein 88