PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 918852
Common NameARALYDRAFT_918852
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family C3H
Protein Properties Length: 667aa    MW: 73176.9 Da    PI: 6.4263
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
918852genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH18.34.2e-06399419525
              --SGGGGTS--TTTTT-SS-S CS
  zf-CCCH   5 lCrffartGtCkyGdrCkFaH 25 
              +C++f   G+C++Gd+C F+H
   918852 399 PCNNFIIKGFCHRGDSCLFSH 419
              7******************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010315.939340367IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.22E-6340365IPR000571Zinc finger, CCCH-type
SMARTSM003560.012341366IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.0E-4344365IPR000571Zinc finger, CCCH-type
SMARTSM003560.0033369395IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.23369396IPR000571Zinc finger, CCCH-type
SMARTSM003561.9397421IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-5398423IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.789399422IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 667 aa     Download sequence    Send to blast
MESSVAPFPH RRTHLSNRTY RSLLHHLCSS FDREPRVSLA TPAVLHELVL RTEIAPVSPG  60
ETCKPPENLS MVESKSNGVS VDLRGENSQE KSLMLGDVFD GIDLQDASVG IRHTDFFDSF  120
ELMINENPDF VPESCVNLFE ALDVNDYDGD GMVASLDNIA KQPLDFVQNV VEKPNISTES  180
DKKVEEVPKS AESNEVKSSG FLEACDETVQ REMELEKPVD STPVLVDSVS RIVEDDDVEE  240
GEISGDDNDD MLVEDDEPVE RHEECQVSRD GIGNSHLTSH ESFGKELGVE MDPGTSIKKR  300
SAPSKDAKAR KRAKARKKRA KERIALGVKK LKLKPVAPKP KPIKYCRHYL KGRCHEGDKC  360
KFSHDTTPET KSSACCYFAT QSCMKGDDCP FDHDLSKYPC NNFIIKGFCH RGDSCLFSHK  420
GTPQSASDTP SANVTASSTN ITAASFSPQK TNKQSVREAI AKLPGIQARV SSSVGFLKPL  480
SQSNHRNPSD ALSPKINEPV THPQVLPLRK PSVAPKGMSF LSLDKTFQED TVKVSPASKR  540
NTDNSDNQTL KQSQLGSSLP LVPPKGISFL SFASEEPKTL NREPQEPSSS RNLKTTPSSH  600
IQSSLLSAMK LAAEFESAKV ERRNNDPTEA VNKSNVTTVN TTVTRNSGNI SSKILEFLSS  660
FSQGKN*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1297318KKRSAPSKDAKARKRAKARKKR
2308314ARKRAKA
3309331RKRAKARKKRAKERIALGVKKLK
Functional Description ? help Back to Top
Source Description
UniProtPossesses RNA-binding and ribonuclease activities in vitro. {ECO:0000269|PubMed:18582464}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap918852
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0240350.0AB024035.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MHM17.
GenBankCP0026880.0CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002866173.10.0zinc finger CCCH domain-containing protein 65
SwissprotQ9LTS70.0C3H65_ARATH; Zinc finger CCCH domain-containing protein 65
TrEMBLD7MM850.0D7MM85_ARALL; EMB1789
STRINGscaffold_802252.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM121601516