PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 918771
Common NameARALYDRAFT_918771
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family WRKY
Protein Properties Length: 687aa    MW: 74310 Da    PI: 6.2406
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
918771genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY100.31.2e-31273330260
             --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
    WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
             +DgynWrKYGqK vkgse+prsYY+Ct ++C+vkkkvers+ +++++ei+Y+g Hnh+k
  918771 273 EDGYNWRKYGQKLVKGSEYPRSYYKCTNPNCQVKKKVERSR-EGHITEIIYKGAHNHSK 330
             8****************************************.***************85 PP
2WRKY1017e-32486544159
             ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
    WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
             ldDgy+WrKYGqK+vkg+++prsYY+Ct ++C+v+k+ver+++d k v++tYeg+H h+
  918771 486 LDDGYRWRKYGQKVVKGNPNPRSYYKCTAPDCTVRKHVERASHDLKSVITTYEGKHIHD 544
             59*******************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.5E-28265331IPR003657WRKY domain
SuperFamilySSF1182904.58E-25270331IPR003657WRKY domain
SMARTSM007741.6E-34272330IPR003657WRKY domain
PfamPF031065.8E-24273328IPR003657WRKY domain
PROSITE profilePS5081123.25273331IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.7E-35471546IPR003657WRKY domain
SuperFamilySSF1182901.7E-27478546IPR003657WRKY domain
PROSITE profilePS5081136.3481546IPR003657WRKY domain
SMARTSM007741.5E-35486545IPR003657WRKY domain
PfamPF031061.5E-23487543IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009555Biological Processpollen development
GO:0009942Biological Processlongitudinal axis specification
GO:0030010Biological Processestablishment of cell polarity
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 687 aa     Download sequence    Send to blast
MAGFDDNVAV MGEWVPRSPS PGTLFSSAIG EEKSSKRVLE RELSLNHGQV IGLEEDTTGN  60
HNKDSSQTNV FRGGLSERIA ARAGFNAPRL NTENIRSNND FSIDSSLRSP CLTISSPGLS  120
PATLLESPVF LSNPLAQPSP TTGKFPFLPG VNGNALSSDK AKDEFFDDIG ASFTFHPVSR  180
SSSSFFQGTT EMMSVDYGNY NSRSSSHQSA EDVKPGSQNI ESSNLYGIET DNQNGQNKTS  240
DVTTNTSLET VDHQEEEEEQ RRGDSMVGGA PAEDGYNWRK YGQKLVKGSE YPRSYYKCTN  300
PNCQVKKKVE RSREGHITEI IYKGAHNHSK PAPNRRSGMQ VDGTEQVEQQ KQQQRDSPAT  360
WVSCNSNQQQ GGSNENNVEE GSTGFEYGNQ SGSIQAQTGG QYKSGDAVVV VDASSTFSND  420
EDEDDRGTHG SVSMGYDGGG GGGGEGDESE SKRRKLEAYA AEMSGATRAV REPRVVVQTT  480
SDVDILDDGY RWRKYGQKVV KGNPNPRSYY KCTAPDCTVR KHVERASHDL KSVITTYEGK  540
HIHDVPAARN SSHGGGGSGN SNSGGSAAVS HHYHNGHHTE PPRGRFDRQV TTTNQSPFGR  600
PFSFQPHLGP PSGFSFGLGQ AGLANLSMPG LAYGQGKMPG LPHPYLTQPV GMSEAMMQRG  660
MEPKVEQVSD SGQSVYNQIM SRLPQI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A7e-35273547878Probable WRKY transcription factor 4
2lex_A7e-35273547878Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Regulates WOX8 and WOX9 expression and basal cell division patterns during early embryogenesis. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Required to repolarize the zygote from a transient symmetric state. {ECO:0000269|PubMed:21316593}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00071PBMTransfer from AT5G56270Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap918771
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4183080.0AF418308.1 Arabidopsis thaliana WRKY transcription factor 2 (WRKY2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002864443.10.0probable WRKY transcription factor 2
SwissprotQ9FG770.0WRKY2_ARATH; Probable WRKY transcription factor 2
TrEMBLD7ML960.0D7ML96_ARALL; Uncharacterized protein
STRINGscaffold_802171.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM79542740
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56270.10.0WRKY DNA-binding protein 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Ueda M, et al.
    Transcriptional integration of paternal and maternal factors in the Arabidopsis zygote.
    Genes Dev., 2017. 31(6): p. 617-627
    [PMID:28404632]
  4. Lei R, et al.
    Arabidopsis WRKY2 and WRKY34 transcription factors interact with VQ20 protein to modulate pollen development and function.
    Plant J., 2017. 91(6): p. 962-976
    [PMID:28635025]