PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 918675
Common NameARALYDRAFT_918675
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family G2-like
Protein Properties Length: 160aa    MW: 17860.4 Da    PI: 10.5193
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
918675genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like32.22.4e-1048752550
  G2-like 25 ekAtPktilelmkv..kgLtlehvkSHL 50
              +AtPk+i++lmkv  +gLt+++vkSHL
   918675 48 AVATPKQIRDLMKVkvDGLTNDEVKSHL 75
             579*********85227**********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.565.101.1E-12248IPR003594Histidine kinase-like ATPase, C-terminal domain
SuperFamilySSF558749.03E-7249IPR003594Histidine kinase-like ATPase, C-terminal domain
Gene3DG3DSA:1.10.10.601.0E-64975IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 160 aa     Download sequence    Send to blast
MALDKIRFES LTDKSKLDGQ PELFLHIIPD KTNNTLNIID SVIGMTKAVA TPKQIRDLMK  60
VKVDGLTNDE VKSHLHIAHK KTSYSGSNKR WRNPQQLQFM VVEGIWVLSH DTTNNRVYAL  120
VAVQSSPSGE RSRRRCKSPT TSSTHTTPSS SIIDSSRFV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4x9l_A6e-2024877123Heat shock protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in phosphate signaling in roots. {ECO:0000250|UniProtKB:Q9FX67}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap918675
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0114762e-49AB011476.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MDA7.
GenBankCP0026882e-49CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
GenBankY118282e-49Y11828.1 A.thaliana hsp81.4 gene.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002885980.18e-80transcription factor HHO3
SwissprotQ9FPE88e-28HHO3_ARATH; Transcription factor HHO3
TrEMBLD7MKG51e-114D7MKG5_ARALL; Uncharacterized protein
STRINGscaffold_802075.11e-114(Arabidopsis lyrata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25550.13e-30G2-like family protein
Publications ? help Back to Top
  1. Nagarajan VK,Satheesh V,Poling MD,Raghothama KG,Jain A
    Arabidopsis MYB-Related HHO2 Exerts a Regulatory Influence on a Subset of Root Traits and Genes Governing Phosphate Homeostasis.
    Plant Cell Physiol., 2016. 57(6): p. 1142-52
    [PMID:27016098]