PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

918457

Common Name

ARALYDRAFT_918457

Organism

Arabidopsis lyrata

Taxonomic ID

81972

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

GRF

Protein Properties

Length: 370aa MW: 40860.8 Da PI: 8.1119

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
918457	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	74.9	8.7e-24	111	154	2	45
WRC 2 aepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 epgrCrRtDGKkWRC ++v++++k+CE+Hlhrgr rsrk++e+ 918457 111 LEPGRCRRTDGKKWRCAKEVVSNHKYCEKHLHRGRPRSRKHVEP 154 69***************************************996 PP
2	QLQ	51	4.4e-18	62	93	2	33
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlq 33 +FT+aQl +L++Q+++yKy++a+ PvP +Ll+ 918457 62 PFTNAQLKELERQAMIYKYMIASIPVPFDLLV 93 9*****************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00951	6.0E-11	61	97	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51666	17.944	62	97	IPR014978	Glutamine-Leucine-Glutamine, QLQ
Pfam	PF08880	3.7E-11	62	92	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51667	23.345	110	154	IPR014977	WRC domain
Pfam	PF08879	6.0E-19	112	153	IPR014977	WRC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010114	Biological Process	response to red light
GO:0010218	Biological Process	response to far red light
GO:0080167	Biological Process	response to karrikin
GO:0005634	Cellular Component	nucleus
GO:0005524	Molecular Function	ATP binding

Sequence ? help Back to Top
Protein Sequence Length: 370 aa Download sequence Send to blast
MDFLKVSDKT TIPCRSDSLF SLNQQQYKES SFGFRDMEIH PHPHLTTPYS GNGVLGCYYY 60 YPFTNAQLKE LERQAMIYKY MIASIPVPFD LLVSSPSSAS PCNNKNIAGD LEPGRCRRTD 120 GKKWRCAKEV VSNHKYCEKH LHRGRPRSRK HVEPPYSRPN NNGGSVKNRD LKNLPRKLSN 180 SSFKDKTLET IEVSSSISNY RESRGSEVFT ISATTEQENK YLNFIDVWSD GVRSSEKQST 240 TTSTPVSSSN GNLSLYSLDL SMGGNNLMGQ DEMGLIQMGL GVIGSGREDH NGYGPYGVTS 300 SLEEMSSWLA PMSTTPGGPL AEILRPSPNL VISGDIESYS LMETPTPSSS PSRVVKKMAS 360 SVSDESSQI*

Sequence ? help Back to Top

Protein Sequence Length: 370 aa Download sequence Send to blast

MDFLKVSDKT TIPCRSDSLF SLNQQQYKES SFGFRDMEIH PHPHLTTPYS GNGVLGCYYY  60
YPFTNAQLKE LERQAMIYKY MIASIPVPFD LLVSSPSSAS PCNNKNIAGD LEPGRCRRTD  120
GKKWRCAKEV VSNHKYCEKH LHRGRPRSRK HVEPPYSRPN NNGGSVKNRD LKNLPRKLSN  180
SSFKDKTLET IEVSSSISNY RESRGSEVFT ISATTEQENK YLNFIDVWSD GVRSSEKQST  240
TTSTPVSSSN GNLSLYSLDL SMGGNNLMGQ DEMGLIQMGL GVIGSGREDH NGYGPYGVTS  300
SLEEMSSWLA PMSTTPGGPL AEILRPSPNL VISGDIESYS LMETPTPSSS PSRVVKKMAS  360
SVSDESSQI*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that plays a role in the regulation of cell expansion in leaf and cotyledons tissues. Component of a network formed by miR396, the GRFs and their interacting factors (GIFs) acting in the regulation of meristem function, at least partially through the control of cell proliferation. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	918457

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: microRNA 396 (miR396a or miR396b) negatively regulates growth-regulating factors (GRF1-4 and GRF7-9). {ECO:0000269\|PubMed:15200956, ECO:0000269\|PubMed:19453503, ECO:0000269\|PubMed:20023165}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK176109	0.0	AK176109.1 Arabidopsis thaliana mRNA for putative protein, complete cds, clone: RAFL22-89-N21.
GenBank	BT010882	0.0	BT010882.1 Arabidopsis thaliana At5g53660 gene, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002864265.1	0.0	growth-regulating factor 7
Swissprot	Q9FJB8	0.0	GRF7_ARATH; Growth-regulating factor 7
TrEMBL	D7MT20	0.0	D7MT20_ARALL; AtGRF7
STRING	scaffold_801857.1	0.0	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM12106	27	31

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G53660.1	0.0	growth-regulating factor 7

Link Out ? help Back to Top
Phytozome	918457
Entrez Gene	9300341

Publications ? help Back to Top
Cao Y,Han Y,Jin Q,Lin Y,Cai Y Comparative Genomic Analysis of the GRF Genes in Chinese Pear (Pyrus bretschneideri Rehd), Poplar (Populous), Grape (Vitis vinifera), Arabidopsis and Rice (Oryza sativa). Front Plant Sci, 2016. 7: p. 1750 [PMID:27933074]