PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 918221
Common NameARALYDRAFT_918221
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family MIKC_MADS
Protein Properties Length: 199aa    MW: 23049.9 Da    PI: 10.1039
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
918221genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF87.47.7e-28959151
            S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
  SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
            k+ien + rqvtfskRr g++KKA+ELSvLCda+va +ifs++g+lye++s
  918221  9 KKIENVTSRQVTFSKRRSGLFKKAHELSVLCDAQVAAMIFSQKGRLYEFAS 59
            68***********************************************86 PP
2K-box60.85.4e-21861721298
   K-box  12 akaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 
             +  + l++e+    k+ie L+  +R+++G++L s+s+keLq++ +q+eksl  +R +K +l+ +++e+l+ ke+el++e  +L +++
  918221  86 QYVQGLKKEMVTTVKKIEVLEVHNRKMMGQSLASCSVKELQEIATQVEKSLHIVRLRKAKLYEDELEKLKAKERELKDERVRLCRRV 172
             56788899999999*******999*******************************************************99998776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006631.357161IPR002100Transcription factor, MADS-box
SMARTSM004321.8E-39160IPR002100Transcription factor, MADS-box
SuperFamilySSF554555.62E-31387IPR002100Transcription factor, MADS-box
CDDcd002653.00E-39373No hitNo description
PRINTSPR004044.4E-29323IPR002100Transcription factor, MADS-box
PfamPF003193.2E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004044.4E-292338IPR002100Transcription factor, MADS-box
PRINTSPR004044.4E-293859IPR002100Transcription factor, MADS-box
PROSITE profilePS5129712.22288178IPR002487Transcription factor, K-box
PfamPF014865.8E-2189172IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009909Biological Processregulation of flower development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 199 aa     Download sequence    Send to blast
MVRGKIEIKK IENVTSRQVT FSKRRSGLFK KAHELSVLCD AQVAAMIFSQ KGRLYEFASS  60
DIRNMIKRYA EYKREYFVAE AHPIEQYVQG LKKEMVTTVK KIEVLEVHNR KMMGQSLASC  120
SVKELQEIAT QVEKSLHIVR LRKAKLYEDE LEKLKAKERE LKDERVRLCR RVGERPMGMP  180
SGNKEKEDVE TDLFIGLP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P5e-19172172Myocyte-specific enhancer factor 2B
1tqe_Q5e-19172172Myocyte-specific enhancer factor 2B
1tqe_R5e-19172172Myocyte-specific enhancer factor 2B
1tqe_S5e-19172172Myocyte-specific enhancer factor 2B
6c9l_A5e-19172172Myocyte-specific enhancer factor 2B
6c9l_B5e-19172172Myocyte-specific enhancer factor 2B
6c9l_C5e-19172172Myocyte-specific enhancer factor 2B
6c9l_D5e-19172172Myocyte-specific enhancer factor 2B
6c9l_E5e-19172172Myocyte-specific enhancer factor 2B
6c9l_F5e-19172172Myocyte-specific enhancer factor 2B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMADS-box transcription factor that acts with AGL42 and AGL71 in the control of flowering time. Promotes flowering at the shoot apical and axillary meristems. Seems to act through a gibberellin-dependent pathway. Interacts genetically with SOC1 and its expression is directly regulated by SOC1. {ECO:0000269|PubMed:21609362}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap918221
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ4470610.0DQ447061.1 Arabidopsis thaliana clone pENTR221-At5g51860 MADS-box protein (At5g51860) mRNA, complete cds.
GenBankDQ6533600.0DQ653360.1 Arabidopsis thaliana clone 0000017130_0000012002 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002865878.11e-143MADS-box protein AGL72
RefseqXP_020872015.11e-143MADS-box protein AGL72
SwissprotQ9FLH51e-129AGL72_ARATH; MADS-box protein AGL72
TrEMBLD7MRJ71e-141D7MRJ7_ARALL; MADS-box protein
STRINGscaffold_801621.11e-142(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM7828413
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51860.21e-115MIKC_MADS family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]