PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

NF-YC

Protein Properties

Length: 188aa MW: 20487.1 Da PI: 4.158

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
918088	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	165.6	6.7e-52	17	116	1	100
NF-YC 1 qlksfwekqiekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivprde 100 qlksfw+k++e + +fknhe+P++rik+i+k+d+dv+m++ eaP+l+skace+fi+++t+rswlha+e++r t+k+sd+aaav rt ifdfl+d+v +de 918088 17 QLKSFWSKEMEGDLNFKNHEFPITRIKRIMKFDPDVTMVAGEAPILFSKACEMFIMDVTMRSWLHAQESNRLTIKRSDVAAAVDRTLIFDFLLDVVDEDE 116 89**********************************************************************************************9997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47113	8.22E-29	6	108	IPR009072	Histone-fold
Gene3D	G3DSA:1.10.20.10	2.8E-29	31	99	IPR009072	Histone-fold
Pfam	PF00808	6.3E-18	36	99	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 188 aa Download sequence Send to blast
MENITGNHQQ PQKDNEQLKS FWSKEMEGDL NFKNHEFPIT RIKRIMKFDP DVTMVAGEAP 60 ILFSKACEMF IMDVTMRSWL HAQESNRLTI KRSDVAAAVD RTLIFDFLLD VVDEDEGESV 120 VAAADLVAVP HLDNGELPPG MVIGTPVCSG LGIYAPQPQM QAWPGAWTAA PGEEEDAAGG 180 NGEDGGN*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5g49_B	5e-34	24	112	5	93	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	918088

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002865814.1	1e-138	nuclear transcription factor Y subunit C-8
Swissprot	Q4PSE2	1e-97	NFYC8_ARATH; Nuclear transcription factor Y subunit C-8
TrEMBL	D7MQ91	1e-136	D7MQ91_ARALL; Uncharacterized protein
STRING	scaffold_801488.1	1e-137	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM17675	5	10

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G27910.1	1e-86	nuclear factor Y, subunit C8

Link Out ? help Back to Top
Phytozome	918088
Entrez Gene	9301888

Publications ? help Back to Top
Mei X, et al. Identification and characterization of paternal-preferentially expressed gene NF-YC8 in maize endosperm. Mol. Genet. Genomics, 2015. 290(5): p. 1819-31 [PMID:25851237] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]