PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 918048 | ||||||||
Common Name | ARALYDRAFT_918048 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | NAC | ||||||||
Protein Properties | Length: 223aa MW: 24689.1 Da PI: 8.9461 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 65.6 | 1.4e-20 | 5 | 143 | 6 | 127 |
NAM 6 rFhPtdeelvveyLkkkvegkk..leleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgelvglkk 104 F+P+d++l+ + L+kk+++++ e+e+ ikevd++++eP+++p ++ ++++ w+ s+ +k + + +r +r+ k+g+Wk gk + +++ +g+++g kk 918048 5 SFNPNDHDLI-DCLNKKITEEDgiSETESLIKEVDLCNHEPQEIPtLATMKSNHTWHIISPVRKLNGSCQRIKRSSKTGRWKVNGKCTIIKDVvTGKEIGSKK 106 5*********.6799999988885455556***************5444456779*******************************888877678999***** PP NAM 105 tLvfy...........kgrapkge...ktdWvmheyr 127 L f ++++p+g k+ W +hey+ 918048 107 YLDFMlkekknpssssSASSPRGMqriKSGWSIHEYS 143 *****877666655442333333355599******97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 24.71 | 1 | 163 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 1.7E-25 | 5 | 163 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.1E-9 | 5 | 143 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 223 aa Download sequence Send to blast |
MSLHSFNPND HDLIDCLNKK ITEEDGISET ESLIKEVDLC NHEPQEIPTL ATMKSNHTWH 60 IISPVRKLNG SCQRIKRSSK TGRWKVNGKC TIIKDVVTGK EIGSKKYLDF MLKEKKNPSS 120 SSSASSPRGM QRIKSGWSIH EYSSFIEDEP KKDAFVLCKL RKKATAVGEA SQAVAAAVTD 180 PAITPNHAVD ASSAAAAVTH PPMVTPNEVW KNKHINYLYL EY* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 918048 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023633377.1 | 5e-51 | NAC domain-containing protein 62 | ||||
TrEMBL | D7MQ54 | 1e-164 | D7MQ54_ARALL; Uncharacterized protein | ||||
STRING | scaffold_801448.1 | 1e-165 | (Arabidopsis lyrata) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G04430.1 | 8e-25 | NAC domain containing protein 49 |
Link Out ? help Back to Top | |
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Phytozome | 918048 |
Entrez Gene | 9300132 |