 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
917343 |
| Common Name | ARALYDRAFT_917343 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
|
| Family |
NF-YC |
| Protein Properties |
Length: 132aa MW: 14819.1 Da PI: 10.2028 |
| Description |
NF-YC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| 917343 | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | NF-YC | 51.4 | 2.4e-16 | 9 | 89 | 18 | 97 |
NF-YC 18 nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtd.ifdflvdivp 97
+ e+Pl r+kki+k d+++++i +ea +++ + elf+ l+ +s + + e+kr+t++ + +av+r + + dfl+d p
917343 9 RPEFPLGRVKKIMKLDKEINKINSEALHVITYSTELFLHFLAEKSAIVTAEKKRKTVNLDHLRTAVKRHQpTSDFLLDSLP 89
568***************************************************************9976489*****987 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 132 aa
Download sequence Send
to blast |
MAEEETSTRP EFPLGRVKKI MKLDKEINKI NSEALHVITY STELFLHFLA EKSAIVTAEK 60
KRKTVNLDHL RTAVKRHQPT SDFLLDSLPL PAQPVKHTKS VSDKKAPPPP IGTRRIDDFF 120
SKGKEKTDDS A*
|
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AB017070 | 1e-148 | AB017070.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MNL12. |
| GenBank | AB493774 | 1e-148 | AB493774.1 Arabidopsis thaliana At5g43250 mRNA for hypothetical protein, partial cds, clone: RAAt5g43250. |
| GenBank | CP002688 | 1e-148 | CP002688.1 Arabidopsis thaliana chromosome 5 sequence. |
